CN189208

Overview
NameCN189208
Unique NameCN189208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13753 contig Csv1_Contig13753:339..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189208 vs. ExPASy Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = -1 
Query:  345 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA--VALVSTNGPWITFMKLRLDRVLSDSYEAGS--LEEALAS 638
            YY+ +A+ KF+L EEE F+E+L ER R+YGE++KE DFW VI+P FL+       + + P   VA+VSTN  +I ++KLRL+ VL+  +EA S  + + LAS
Sbjct:   31 YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAPEKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131
The following BLAST results are available for this feature:
BLAST of CN189208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC54L_SYNY32.241e-1547.06Ycf54-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189208 ID=CN189208; Name=CN189208; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTCTGGAAATAAATGTTATTACCTCCTCAAAATACC
AAATATTAACTTGTCGATTTCAGGTCCTGAAGAACTAACCTTCAAAGTTT
AAAATATGAACTGCTTCACCATTGCATGCAAATCTCAATCGCTACTTACT
AATACATGATGAAAATTCGTCTGTTAACAAGAGTTGAGAAGAAAAGATTA
AAAAAAAATAAAAAAGGAAATGTTGCCCTATACTTTTGACCCTTTTGATC
CGGTAGGCAAGAAGGCCTCCCACCATCCAAATTCATATTTCGGATAAGGT
GCCACCCACTTCTCTTGCTTCTCAAACTCGAGAGTGGCAGGATTAGAGGC
TAAAGCTTCCTCTAGACTGCCAGCTTCATAGCTATCTGATAAAACCCGGT
CCAGCCTCAGTTTCATAAACGTAATCCAGGGACCATTAGTTGAAACCAGA
GCGACAGCAGGTCTGCGCAATCTCTTAGTAATGTTAGGGAACTTATCCAA
GAACTTGGGCTCAATAACTAACCAAAAGTCCTGCTCTTTACTACGCTCTC
CATAGTTCCGTAGGCGCTCGAACAAGAGCTCCTGGAAGTGCTCTTCTTCG
TCCAGCATGAACTTTGCATTCGCAACAACAAAATAATACTTGTTTGCTTC
CTTTTCCCT
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