CN189205

Overview
NameCN189205
Unique NameCN189205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2815 contig Csv1_Contig2815:3..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.020e-51
Identity = 96/108 (88.89%), Postives = 105/108 (97.22%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            LTMLKRRVPPAVPGIMFLSGGQSE EATLNLNAMNQ+PNPWHVSFSYARALQN+VL+TWQG+PE  EA+QK+LLVRAKANSLAQLGKYSAEGE+E+AKKGMFV+GYTY
Sbjct:  284 LTMLKRRVPPAVPGIMFLSGGQSEAEATLNLNAMNQSPNPWHVSFSYARALQNSVLRTWQGKPEKIEASQKALLVRAKANSLAQLGKYSAEGENEDAKKGMFVKGYTY 391          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.141e-48
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L +L+ RVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNT LKTW GRPEN  AAQ +LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  291 LKLLRNRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVNAAQTTLLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 398          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.004e-46
Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L +L+ R+PPAVPGIMFLSGGQSE+EATLNLNAMNQAPNPWHVSFSYARALQNT LKTW G+ EN +AAQ  LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  292 LKLLRNRIPPAVPGIMFLSGGQSELEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGKEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 399          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 86/108 (79.63%), Postives = 98/108 (90.74%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L +L RR+PPAVPGIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK +FV+GY+Y
Sbjct:  249 LNLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.436e-44
Identity = 85/108 (78.70%), Postives = 97/108 (89.81%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L +L RR+PPAVPGIMFLSGGQSEVEAT NLNAMNQ PNPWHVSFSYARALQNT LKTW G+PEN +AAQ +LL+RAKANSLAQLGKY+++GE+ EAK+GMFV+ Y Y
Sbjct:  281 LKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.108e-42
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L +L RR+PPAVPGIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK    +GY+Y
Sbjct:  243 LNLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYIGDGESEEAKKDC-CQGYSY 349          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = -1
Query:  367 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVR 678
            L +L RR  P VPGIM LSGGQSEVEATLNLNAMNQ+PNPWHVSFSYARALQNT LKTW    EN +A        AK+NSLAQLGKY+ EGESEE KK MFV+
Sbjct:  289 LKLLHRRRGPVVPGIMVLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWVEGQENVKAQD---FACAKSNSLAQLGKYTGEGESEERKKDMFVK 389          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 678
            L ML  R PP VPGIMFLSGGQSE+E+TLNLNAMNQ+PNPWHVSFSYARAL NTVLKTWQ  P   +A + +   R KANS AQ GKY A  E +EA +GM+ +G  Y
Sbjct:  267 LKMLAARAPP-VPGIMFLSGGQSELESTLNLNAMNQSPNPWHVSFSYARALTNTVLKTWQASPRTVQAPRLAAQAR-KANSDAQQGKYDATTEGKEAAQGMYEKGKGY 372          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF_DICDI (Fructose-bisphosphate aldolase OS=Dictyostelium discoideum GN=fba PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = -1
Query:  355 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 669
            L+R VPPA+ G++FLSGGQ+E+EAT NLNAMN  PN PW +SFSY RALQ +V+ TW+G   N EAA+K  L RAK NSLAQLGKY+ E  +  A + ++V+ Y Y
Sbjct:  252 LQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY 357          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF_SPIOL (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.034e-26
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = -1
Query:  355 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMN--QAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 669
            L+R VP AVPG+MFLSGGQSE EATLNLNAMN  +   PW +SFSY RALQ + LK WQG+ EN   AQ+  L RAK NS A LGKY       +A + + V+ Y Y
Sbjct:  251 LQRTVPQAVPGVMFLSGGQSEEEATLNLNAMNKLETKKPWTLSFSYGRALQQSTLKAWQGKEENVAKAQEVFLARAKGNSEATLGKYQGGAGGADASESLHVKDYKY 357          
The following BLAST results are available for this feature:
BLAST of CN189205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ALFC3_ARATH6.020e-5188.89Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_ARATH2.141e-4886.11Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH2.004e-4682.41Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC1_PEA4.936e-4579.63Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC_ORYSJ1.436e-4478.70Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC2_PEA5.108e-4277.78Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
ALFC_SPIOL8.733e-3472.12Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALFC_CHLRE1.821e-3165.74Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF_DICDI8.458e-2958.49Fructose-bisphosphate aldolase OS=Dictyostelium di... [more]
ALF_SPIOL1.034e-2657.01Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001H19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189205 ID=CN189205; Name=CN189205; organism=Citrus sinensis; type=EST; length=678bp
AGGATTTAAATATCAACTGGAGACATGAAAAAAGAAAAAAAAAAAAAAGT
AGAACTCATAATTTAGAGTACAGTAGCATAAAAACATAGAAATACAATGA
TTCTTGTTTAACTAGTACCCCTTTCGCTGGGCTACAGTTTGTAAAATCTT
TTCTTATCTCACAGGTTTTATTCAAGCTCTCTATTTATTAGGTGGATAAA
AGAAAATGAAAAAACTTCTAATAGAAATCTTGTCCGTATCCCAAAAAAAT
TTTAAAAAAAAGGGAAGGAACCAAAACAAAAGCAAGTGCACAATGACACA
AGTGTCATGAGTTGCCTCAGGCAAGCTCAAACTGCATAGTATATTATTGG
CTTAGTAAGTGTAGCCCCTGACAAACATTCCTTTCTTGGCTTCCTCGCTT
TCACCTTCTGCGGAATACTTCCCAAGCTGCGCCAAGGAATTTGCCTTTGC
ACGCACCAATAGTGACTTTTGTGCAGCTTCAGTATTCTCAGGACGACCTT
GCCATGTCTTAAGAACAGTGTTCTGAAGCGCCCGGGCATAAGAAAAGGAC
ACGTGCCAGGGGTTGGGGGCTTGGTTCATCGCATTCAAGTTCAATGTTGC
TTCCACTTCTGATTGTCCTCCAGACAAAAACATGATTCCTGGGACTGCAG
GGGGTACTCTCCTCTTGAGCATTGTAAG
back to top