CN189201

Overview
NameCN189201
Unique NameCN189201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.065e-32
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NP++KI+GVEP ES  L+GGKPGPH I G G GF P +LD+D++ +  +V SD+A++MA+ LALKEG++VGIS GA   AA+RL   P  +GKLFV V   FG   LS VLFQ ++KE  NM
Sbjct:  197 NPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLSSVLFQSIKKEAENM 318          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.003e-32
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPNVK++GVEP ES  LNGGKPGPH I G G GF P +LD+D++++  +V SD+A++ A+ LALKEG++VGIS GA   AA+RL   P   GKLFV V   FG   LS VLFQ ++KE  +M
Sbjct:  200 NPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESM 321          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 64/122 (52.46%), Postives = 87/122 (71.31%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPN+K++GVEP ES  LNGGKPGPH I G G GF P +LD+D++++  +V SD++++MA+ LALKEG++VGIS GA   AA+++   P   GKLFV V   FG   LS VLF  ++KE  +M
Sbjct:  201 NPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLSSVLFHSIKKEAESM 322          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NP +KI+GVEP ES  L+GG+PGPH I G G GF P +LD++++++V +V SD+A+ MA++LALKEG++VGIS GA  VAA+R+   P  KGKL V V   FG   LS VLF+ +++E  NM
Sbjct:  200 NPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENM 321          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.389e-31
Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  249 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQP 620
            NP V++ G+EP ESN L+GGKPGPH I G G GF P  LD+ VM++V EV S++AV+MA++LA+KEG++VGIS GA   AA+R+   P   GKL   V   FG   LS +LFQ +R+E  NM+P
Sbjct:  259 NPGVQVIGIEPTESNILSGGKPGPHKIQGLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGLLVGISSGAAAAAAVRIGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENMKP 382          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPNVK++GVEP ES  L+GGKPGPH I G G GF P +L++D++++V +V SD+++ MAR LALKEG++VGIS GA   AA++L   P   GKLFV V   FG   LS VLF   RKE  +M
Sbjct:  197 NPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 318          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.869e-30
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = -2
Query:  249 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQP 620
            NPN+KI GVEP ESN L+GGKPGPH I G G GF P  LD DVM++V E+ SD+AV+ AR LAL+EG++VGIS GA  +AA+++   P   GKL   V   +G   LS +LFQ +R+E   M+P
Sbjct:  261 NPNIKIIGVEPTESNVLSGGKPGPHKIQGIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKMKP 384          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.391e-30
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            N NVK++GVEP ES  L+GGKPGPH I G G GF P +L++D++++V +V SD+++ MAR+LALKEG++VGIS GA   AA++L   P   GKLFV +   FG   LS VLF   RKE   M
Sbjct:  197 NANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAM 318          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPN+K++GVEP ES  L+GGKPGPH I G G GF P +LD++++++V +V S+++++ A+ LALKEG++VGIS GA   AA+R+   P   GKL V V   FG   LS VLF+ +++E  NM
Sbjct:  200 NPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENM 321          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.410e-29
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = -2
Query:  255 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNM 620
            NPNVK++GVEP ES  L+GGKPGPH I G G GF P++L+ +++++V +V SD+++ MAR LA +EG++VGIS GA   AA++L   P   GKLFV V   FG   LS VLF   RKE  +M
Sbjct:  199 NPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 320          
The following BLAST results are available for this feature:
BLAST of CN189201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK1_ORYSJ3.065e-3255.74Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_MAIZE4.003e-3255.74Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK_WHEAT1.521e-3152.46Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK2_ORYSJ1.521e-3153.28Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSKP_SPIOL3.389e-3153.23Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_BRAJU9.859e-3154.92Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_SOLTU2.869e-3054.03Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ARATH6.391e-3053.28Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_CITLA4.142e-2950.00Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK2_BRAJU5.410e-2952.46Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189201 ID=CN189201; Name=CN189201; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATTCAAAATTCCAAGTATTTAAATTCAAAA
TTCCAAATACCCCAACTGCAAAAAATCATTTTCATTTTCATTTTTATTCT
TAAAAAAAACAAATTGAAACAATACCAAACGGGCCTAAACTATCTGAAGG
GATCAAATTTCATACAAATAAAGTTCAACAAGCAAATTTGATACAAGTTC
ACCTTTCTAAAAAACAACCCCCATATACAAGCATTATTCAACTGAAACTG
GTTGCATGTTCCCACCTTCTTTCCTGAGTTCTTGAAACAAAACAAATGAC
AAGTTTCCCCCCCCAAAGCCCCCATGAACAGTCACAAAAAGTTTGCCTTT
TTTCCCTGGCATGCTAACAAGTCTTAGGGCTGCCACTGTATTGGCCCCAA
ATGATATTCCAACCATAACCCCTTCCTTCAATGCCAGTTCCCTGGCCATT
TTTACTGCATCGTCACTACAAACCTCAAAAACCTTTTCCATCACATCCAT
GTCTAGAATATCGGGTTTGAACCCAACCCCCTTGCCAGTAATGAAATGAG
GACCTGGTTTGCCCCCATTCAAAAAATTACTTTCAGCCGGTTCCACCCCA
AAGATCTTAACATTAGGATTT
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