CN189188

Overview
NameCN189188
Unique NameCN189188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4812 contig Csv1_Contig4812:169..787. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = -2
Query:  290 GFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQAG 610
            GFRDEGPP+EVVE+++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSYSPGDKF+IDP KLLPLARFLPQPKGQ+  G
Sbjct:   48 GFRDEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGG 154          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.673e-44
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = -2
Query:  299 GFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQA 616
            G G  DEGPP+EVVE+++FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPKGQ+
Sbjct:   33 GGGNYDEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQS 138          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 67/104 (64.42%), Postives = 81/104 (77.88%), Query Frame = -2
Query:  308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGF  RD GPPA V+E+  F+HACEG+ V + TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGI ATS+  GDKFYI   KLLPL RFLP+PK
Sbjct:   24 GGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  308 GGFGFR--DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGFG R   +GPP  V+E+ +FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F+VK  +G+ A S+S GDKFYI P KLLP+ RFLP+PK
Sbjct:   20 GGFGGRAAPQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPK 125          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_BOTFB (H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = -2
Query:  308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGF  RD GPPA+V  + SFLHA EG+ V +  N KIP+FNAPIYL+NKT IGKVDEI GPIN+ YF++K  EGI ATS+  GDKFYI   KLLPL +FLP+PK
Sbjct:   34 GGFQQRDNGPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSFKTGDKFYIGGDKLLPLEKFLPKPK 137          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = -2
Query:  308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGF  +  GPPA+V+E+ +F+HACEG+ V +  N KIP+FNAPIYL+NKT IGKVDE+ GPIN+ YF++K  EGIVATS+ PGDK YI   KLLPL +FLP+PK
Sbjct:   28 GGFQAQT-GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLEKFLPKPK 130          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  308 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 595
            GPP  V+E+ SF+HACEG+ V +  N KIP+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGIVATS+ PGDKFYI   KLLPL +FLP+PK
Sbjct:   35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDKLLPLEKFLPKPK 130          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  308 GGFGFR---------DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGFG R          +GPP  V+E+  F+H CEGD V +  N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF++K  EG+ ATS+  GDKFYI P KLLP+ RF+P+PK
Sbjct:   16 GGFGGRGGARGGRPIQQGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = -2
Query:  308 GGFGFRD--EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGFG R   +GPP  VVE+ +F+H CEGD V +  N KIP+FNA IYL+NKT++GKVDEI GP+NE +F++K  EG+ A+S+  GDKFYI P KLLP+ RF+P+PK
Sbjct:   23 GGFGGRQFQQGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPK 128          
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32
Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = -2
Query:  308 GGF--GFR----------DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619
            GGF  GFR           +GPP  V+E+ +FLH CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K  +G+ ATS+  GDKFYI   KLLP+ RFLP+PK
Sbjct:   12 GGFRGGFRGGRTGSARSFQQGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127          
The following BLAST results are available for this feature:
BLAST of CN189188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NLAL1_ARATH2.113e-4985.05Putative H/ACA ribonucleoprotein complex subunit 1... [more]
NLAL2_ARATH2.673e-4480.19H/ACA ribonucleoprotein complex subunit 1-like pro... [more]
GAR1_CHAGB1.920e-3464.42H/ACA ribonucleoprotein complex subunit 1 OS=Chaet... [more]
GAR1_KLULA3.275e-3463.21H/ACA ribonucleoprotein complex subunit 1 OS=Kluyv... [more]
GAR1_BOTFB7.295e-3465.38H/ACA ribonucleoprotein complex subunit 1 OS=Botry... [more]
GAR1_NEOFI1.244e-3363.46H/ACA ribonucleoprotein complex subunit 1 OS=Neosa... [more]
GAR1_COCIM1.625e-3365.63H/ACA ribonucleoprotein complex subunit 1 OS=Cocci... [more]
GAR1_CANGA1.625e-3357.52H/ACA ribonucleoprotein complex subunit 1 OS=Candi... [more]
GAR1_ASHGO6.176e-3359.43H/ACA ribonucleoprotein complex subunit 1 OS=Ashby... [more]
GAR1_YEAST8.917e-3256.90H/ACA ribonucleoprotein complex subunit 1 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H10_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189188 ID=CN189188; Name=CN189188; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGCATAGAAAACAGCAGTTCATGTTTAAATCAGA
ACTCAGTTTTTGATGTGAACACAATGGTGGCTTTAGAGAAGAAAAACAAA
GGGAGAAAATCACTAGTAGAACTACAGTGTGTTCTAAAACCTTCCTCTGC
CCCTAAAGCCACCACCACGACCACCTCTAGGAGGTCCACCTCTGCCCCTA
AAGCCACCTCCTCCTCCACCACGACCACGGCCTCCACCTCTACCACCTCC
TCTGCCCCTAAAGCCGCCTCCTCCACGGCCGCCTCTTGCACCAGCTTGTG
CCTGTCCCTTTGGTTGCGGAAGAAATCTAGCAAGAGGCAACAGCTTGCTT
GGGTCAATGTAGAACTTATCACCCGGTGAATATGAAGTTGCAACAATACC
TTCCATCATTTTGACCGAAAAATAAGATTCATTAATGGGACCAAAAATTT
CATCAACTTTCCCTATCTGGGTCTTGTTTTGCAGATAGATTGGAGCATTA
AAGAAAGGTATTTTCTCATTGGTGAGCTTTGTCACAGCATCACCTTCACA
CGCATGAAGAAACGAAGATATCTCAACAACTTCGGCAGGAGGTCCTTCGT
CACGGAAACCAAAACCACCT
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