CN189187

Overview
NameCN189187
Unique NameCN189187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:168..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.443e-43
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 386
            M+L KA+E VS N V VFSKT CPFCVSVK+L  +LG TFKA+ELD E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.875e-42
Identity = 81/102 (79.41%), Postives = 90/102 (88.24%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 374
            MA+ KAQE VSSNSVVVFSKT CP+C SVK+L  QLG  FK IELD ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.215e-41
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 386
            MAL KA+ETV+S  VVV+SK+ CPFCV VK+LF+QLG TFKAIELD ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.617e-41
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 386
            MA+ KA+E V+S SVVVFSKT CP+CV VKEL QQLG  FKA+ELD ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.667e-40
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 374
            MA+ K +E VSSN+VVVFSKT CP+C SVK+L  QLG  +K +ELD ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.628e-36
Identity = 71/112 (63.39%), Postives = 89/112 (79.46%), Query Frame = 3
Query:   42 RIKDKEDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 377
            ++++     MAL KA+E V+S+ VVVFSKT CPFC  VK L  +L  ++KA+ELD ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 3
Query:   54 KEDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 389
            KE+ E+ + KA+E VS+  VVVFSKT C +C  VK+L  QLG TFK +ELD+ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.594e-25
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 368
            + K +  + ++ +++FSKT CP+C+SVK+LF++L V    +ELD ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.307e-21
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   57 EDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 356
            + T   + + QET+S+N VV+FSKT C +C   K++F  + V +KA+ELD    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+EGKL+PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CN189187 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   87 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 356
            QET+S+N VV+FSKT C +C   K LF  + V +K +ELD    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
The following BLAST results are available for this feature:
BLAST of CN189187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GLRX_SOLLC6.443e-4377.36Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO1.875e-4279.41Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ1.215e-4177.36Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH4.617e-4176.64Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO6.667e-4075.49Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ7.628e-3663.39Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH7.140e-3461.61Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.594e-2553.06Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE5.307e-2145.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN9.053e-2150.00Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189187 ID=CN189187; Name=CN189187; organism=Citrus sinensis; type=EST; length=614bp
TGAAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTCGAATCAAA
GACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTC
CTCCAATTCCGTCGTCGTTTTCAGCAAAACGCTTTGTCCGTTCTGCGTGA
GTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAA
CTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTG
GACTGGACAGAAAACTGTTCCGAATGTCTTCATCGGAGGGAAACACATTG
GTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCT
CTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGC
TATTCTCTGCCTGTTTATGCTAGTAATAAATAAACAATGTGTTGGTAGTG
CTTAATCTGTCTGAATTAAATATGAAATTATGCTTATTTGAGTAATTTCC
AATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGAATT
TTATCAGATTTTCCATCTACTATATCCATGTAGAGTCATTTCTGCTGTAA
AAAAAAAAAAAAAA
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