CN189184

Overview
NameCN189184
Unique NameCN189184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189184 vs. ExPASy Swiss-Prot
Match: CAP16_ARATH (Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.742e-45
Identity = 101/204 (49.51%), Postives = 127/204 (62.25%), Query Frame = -1 
Query:  140 VRWYALYLEHLLSTSRVLGFFLXXXXXSVEMDKEEEKVSALVNIXXXXXXXXXXXXXEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHR--KRVLIEAFWGLITELKDKVA--KERAYRDERMIVGTGRRDKASESARFGDRLSRRYGDSVRFSSARF 739
            VRWYALYLEHLLSTSR++GFF+     ++  ++ EE VS+L N              E+ CK PD     G  L D I  LVGEDY+S+INE+  R +EF  R   LS GD++EL CALKRLE CKERLS + H   KR  I+ FWGL+ E+K  +   ++   + E+ IVG G+RDK  ESARF DRL   Y + VRFSS RF
Sbjct:  146 VRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYEEMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYTRFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGIIGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSSGRF 349
The following BLAST results are available for this feature:
BLAST of CN189184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAP16_ARATH5.742e-4549.51Putative clathrin assembly protein At4g40080 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189184 ID=CN189184; Name=CN189184; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTGACTTAAATTCACACTATATATAGATTTTCTATTT
ACTTTAATTACACTGACCATACATGGCCATCACTATGCACATGATTCGAT
TGAGTCAAGAACCAGAAAATTAGGAAACCTGTTGAAGCCAAATCTAGCTG
AAGAGAATCGGACTGAGTCACCGTACCTTCTTGAAAGGCGATCTCCAAAC
CGAGCTGACTCACTTGCCTTATCTCTTCTCCCTGTGCCCACTATCATCCT
TTCATCTCTATACGCTCTCTCTTTCGCTACTTTATCCTTCAATTCGGTGA
TTAATCCCCAAAATGCCTCAATCAAAACCCTTTTCCTGTGGGACAAAACC
GACAATCTCTCCTTACAATCCTCCAATCTCTTCAAGGCACAGGCCAACTC
GACCGAGTCACCCAAACTCAAACAACCGAGTCTGTTGTTAAACTCGCTGA
CTCGAATTGAAACCTCGTTTATGGCAGACAAGTAATCTTCGCCCACCAAT
CCCATGATATCGTCCACCAAAGGGTTGCCGCGCACGTGCAAACAATCAGG
CGTTTTACACATCTGTTCAAGCAAACTCAGCAAGGAATCGACCTCTTTGA
GCAAATCAATGTTCACGAGCGCCGACACCTTCTCTTCTTCTTTATCCATC
TCCACAGAACTTGAACTTGAAGAAAGGAAGAAACCCAAAACCCTAGAAGT
GGACAAGAGGTGTTCGAGATATAAAGCATACCATCTGAC
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