CN189183

Overview
NameCN189183
Unique NameCN189183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189183 vs. ExPASy Swiss-Prot
Match: BIM2_ARATH (Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = -3 
Query:  290 LHPLQRPVSDAQSNECPATTDTMNQQEELTVEGGTINISSIYSQGLLNNLTQALESAGIDLSQANISVQIDLGKRANRGLMPEASVAKDLENPPSINQAMAKLRDVSSGEDSDHSQKRLR 649
            L P+   V   Q+NECPAT+D + Q  +L +EGGTI+ISS YS  LL++LTQAL++AGIDLSQA +SVQIDLGKRAN+GL  E   +K   NP S +    + RD S  E+S+HS KR++
Sbjct:  196 LQPILPMVQGEQANECPATSDGLGQSNDLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDLGKRANQGLTHEEPSSK---NPLSYD---TQGRDSSVEEESEHSHKRMK 309
The following BLAST results are available for this feature:
BLAST of CN189183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BIM2_ARATH8.598e-2654.17Transcription factor BIM2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189183 ID=CN189183; Name=CN189183; organism=Citrus sinensis; type=EST; length=675bp
GCGTTTTGCTCAAGCTATAGTCCCTAAAGGGCCGCATTTCATATATCTGA
ATGATTATATATGATACAAGCAAAATACAGGCATCGGCATCCCCTGAATA
TAAATCACAAAAACTACATAAATGAAATTCAAGGTAAAAGCACTTAACCA
CAAAATATCGTAAGCACCCAAGAAAACTAAATGCATCGCATGTACTATAA
TTTCAGGAGAAAACCAAACGGAAAGGCTAGGAAAGAAGAAGAAACTGGGT
GAGAATGAAAGATTCAGGAAATCCATAATAGTCTTATTTCCTCAACCGCT
TTTGACTGTGATCTGAATCCTCTCCGCTGCTTACATCCCTAAGTTTGGCC
ATTGCTTGATTGATCGATGGCGGATTTTCCAAGTCCTTCGCAACAGATGC
CTCAGGCATGAGCCCTCTGTTTGCTCTCTTCCCAAGATCAATCTGCACGG
AGATGTTGGCCTGCGACAGATCTATACCAGCACTCTCCAATGCTTGTGTC
AAATTGTTTAACAACCCCTGTGAGTATATGCTTGATATATTGATCGTCCC
CCCTTCAACTGTCAGCTCTTCCTGTTGGTTCATTGTATCAGTAGTAGCAG
GACACTCATTTGACTGTGCATCAGAGACTGGTCTCTGAAGAGGATGCAGC
AGCACACTATCACTTCGGGGCAGAG
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