CN189181

Overview
NameCN189181
Unique NameCN189181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189181 vs. ExPASy Swiss-Prot
Match: UBR7_HUMAN (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:   86 EAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCAPEGN--AGVCTACSLTCHDGHEVFSL 316
            E E  +S+ + L + EE E EA  VLGG + ++C+YS+G +KRQA+++C TC PEG   AG+C ACS  CH  H++F L
Sbjct:   13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFEL 91
[Close]
BLAST of CN189181 vs. ExPASy Swiss-Prot
Match: UBR7_MOUSE (Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   86 EAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCAPEGN--AGVCTACSLTCHDGHEVFSL 316
            E E  +S+ + L + EE E EA  VLGG + ++C+YS+G + RQA+++C TC PEG   AG+C ACS  CH  H++F L
Sbjct:   13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFEL 91
The following BLAST results are available for this feature:
BLAST of CN189181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBR7_HUMAN3.887e-1648.10Putative E3 ubiquitin-protein ligase UBR7 OS=Homo ... [more]
UBR7_MOUSE2.520e-1546.84Putative E3 ubiquitin-protein ligase UBR7 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189181 ID=CN189181; Name=CN189181; organism=Citrus sinensis; type=EST; length=540bp
ATCAATTAACATTTAAAATCCCTGAAGGGTTTTGATAACCATCACAGGTT
TTTGGAAAATGTCTGGAGAGTTTGATGACGACGTGGAGGCAGAGCAAACC
ATTTCAATTAACGAGTACCTTAACGATGTCGAAGAGAAGGAGCTGGAGGC
AGATTTGGTTTTGGGTGGAGATGAGGGCAAGGAATGTACCTATAGTAAAG
GTTATATGAAGAGACAAGCTATTTTCTCATGCCTTACTTGTGCCCCAGAA
GGAAATGCTGGAGTATGCACAGCATGCTCATTGACTTGCCATGATGGACA
CGAGGTATTTTCTTTGGATATTCTTTACAGGATTGAAGATTTGGTTGTAG
ATGGTTTGTGGCTTAACATTGAAATGAAATGCTGTTGGCCCGGAAATTCT
CAAGGCTTGCGTTAAAAATGTGAACTGATAAAACTTGGTAGCTTTTATTT
GTCTTTCCTACAGTCTGCAAATTGGGGTCTTTCAGCTTGTGTTTAAATCT
GGTGTTGTTGTATTGTTTTCCAAGTTGTGGTTCAGAGTTG
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