CN189172

Overview
NameCN189172
Unique NameCN189172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189172_ssr670 microsatellite CN189172_ssr670:670..681. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:573..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.993e-88
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++LTHVYT ++RPDATYSILIDNVEKQ+GSLY+DWDLLPPK IKDP+AKKPEDWD+KEYIPDPEDKKPEGYDDIPKEI                     PTI NPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDP++YVYPNLKYVGIELWQVKSGT+FDNVL+ +DPEYA +LAEETWGK+
Sbjct:  167 DQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPKKIKDPEAKKPEDWDEKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIANPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKN 352          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.305e-87
Identity = 145/185 (78.38%), Postives = 158/185 (85.41%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            ++LTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDP AKKPEDWD+KE+I DPEDKKPEGYDDIP+EI                     PTIPNPEYKGPWKPKKIKNPNYKGKWKAP+IDNPDFKDDPDLYV+P LKYVG+ELWQVKSGT+FDN+++ DDPEYA  +AEETWGK
Sbjct:  174 DQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPSAKKPEDWDEKEFIDDPEDKKPEGYDDIPEEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKPKKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGK 358          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.305e-87
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++LTHVYTFILRPDA+YSILIDNVEKQSGS+Y+DWD+LPPK IKDP+AKKPEDW+DKEYIPDPEDKKPEGYDDIPKEI                     PTIPNP+YKG WKPKKIKNPN+KGKWKAPMIDNPDFKDDPD+YV+P LKYVGIELWQVKSGTMFDNVL+ DDP+YA KLAEETWGK+
Sbjct:  169 DQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPKQIKDPEAKKPEDWEDKEYIPDPEDKKPEGYDDIPKEITDPEAKKPEDWDDEEDGEWTAPTIPNPDYKGEWKPKKIKNPNFKGKWKAPMIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKN 354          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.215e-86
Identity = 142/185 (76.76%), Postives = 160/185 (86.49%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            ++LTHVYTFI+RPDATYSILIDN+EKQ+GSLYSDWDLLP K IKDP+AKKPEDW+D+EYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKG WKPKKIKNPN+KGKWKAP+IDNP+FKDDP+LYVYPNLKYVGIELWQVKSGT+FDN+L++D+PEYA +LAEETWGK
Sbjct:  171 DQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAKKIKDPEAKKPEDWEDQEYIPDPEDKKPEGYDDIPKEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGEWKPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGK 355          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.483e-86
Identity = 145/186 (77.96%), Postives = 155/186 (83.33%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++LTHVYTF+LRPDATYSILIDNVEKQ+GSLYSDWDLLP K IKDP AKKPEDWDDKEYIPDPED KP GYDDIPKEI                     PTIPNPEY G WKPKKIKNP YKGKWKAPMIDNP+FKDDP+LYV+P LKYVG+ELWQVKSG++FDNVLVSDDPEYA KLAEETWGKH
Sbjct:  169 DQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKH 354          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.222e-85
Identity = 144/185 (77.84%), Postives = 156/185 (84.32%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            ++LTHVYTFILRPDATYSILIDN EKQ+GSLY+DWDLLP K IKDP+AKKPEDWDDKE+IPDPEDKKPEGYDDIP EI                     PTIPNPEYKGPWK KKIKNPNYKGKWKAPMIDNP+FKDDP+LYVYP L+YVG+ELWQVKSGT+FDNVLV DDPEYA +LAEETWGK
Sbjct:  172 DQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPAEITDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKAKKIKNPNYKGKWKAPMIDNPEFKDDPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGK 356          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 8.754e-84
Identity = 139/185 (75.14%), Postives = 156/185 (84.32%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 555
            ++LTHVYTFILRPDATYSILIDNVEKQ+GSLYSDWDLLPPK IKDP AKKPEDWD++EYI DPEDKKP+GYDDIPKEI                     PTIPNPEY G WKPK+IKNPNYKGKW+AP+IDNPDFKDDP+LYV+P LKYVG+ELWQVKSG++FDNVL+ DDP+YA KLA+ETWGK
Sbjct:  169 DQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGK 353          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.070e-81
Identity = 135/186 (72.58%), Postives = 151/186 (81.18%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++L+HVYT I+ PDATY+ILIDNVEKQSGS+Y  WD+LPPK IKDP+AKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKGPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN L++DDPE A   AEETWGKH
Sbjct:  176 DQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKH 361          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.070e-81
Identity = 134/186 (72.04%), Postives = 151/186 (81.18%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++LTHVYTFI+RPDATYSILIDN EK +GS+Y  WD+LPPK IKDP+AKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKGPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN++++DDP  A   AEETWGKH
Sbjct:  172 DQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPKKIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 357          
BLAST of CN189172 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.075e-65
Identity = 107/186 (57.53%), Postives = 138/186 (74.19%), Query Frame = 1
Query:    1 EELTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 558
            ++L H YTFILRPDA+YS+L+DN E++ GS+Y+DWD+LPP+ IK  +AKKPEDWDD+EYI DP D KPEG+D IP+EI                     P IPN  YKGPWK K+IKNPNYKGKWK P IDNP+F+DDPDLYV  ++KY GIE+WQVK+G++FDN+L+ DDP YA  + ++ + +H
Sbjct:  175 DKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQH 360          
The following BLAST results are available for this feature:
BLAST of CN189172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CALR_RICCO9.993e-8877.96Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_NICPL1.305e-8778.38Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_BERST1.305e-8777.96Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_PRUAR3.215e-8676.76Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR1_ARATH5.483e-8677.96Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_BETVU1.222e-8577.84Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR2_ARATH8.754e-8475.14Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ1.070e-8172.58Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE1.070e-8172.04Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR3_ARATH1.075e-6557.53Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189172 ID=CN189172; Name=CN189172; organism=Citrus sinensis; type=EST; length=766bp
GAGGAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGATGCTACTTA
CAGCATCCTCATTGACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTG
ATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGACGCCAAGAAA
CCTGAAGACTGGGACGACAAAGAATATATTCCCGATCCTGAAGACAAGAA
GCCAGAGGGCTATGATGACATTCCAAAGGAGATAACAGATCCTGATGCCA
AGAAGCCTGATGATTGGGATGATGAGGAAGATGGTGAATGGACAGCTCCA
ACCATCCCTAACCCAGAGTACAAGGGTCCATGGAAGCCAAAGAAAATTAA
GAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATTGACAACCCAG
ATTTCAAGGATGACCCAGACCTTTATGTGTATCCCAACTTGAAGTATGTT
GGCATTGAGTTGTGGCAGGTGAAATCTGGAACCATGTTTGACAATGTCTT
GGTTAGTGATGATCCAGAGTATGCCAATAAGTTGGCCGAAGAAACATGGG
GAAAGCATAAGGATGCCGAGAAGGCAGCATTTGATGAGGCCGAGAAGAAG
AGAGAGGAGGAGGAATCAAAGGACGCACCTGATTCTGATGCTGAGGATAA
TGATGACGATGACACTGAAGATGATGATGATGCTGATACTGAAACCAAAT
CAGACTCCAGCAGCGGAGACGCAGACAAGGATGTACATGATGAGCTTGTA
GGGAAAATGCTATGAT
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