CN189169

Overview
NameCN189169
Unique NameCN189169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:253..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.058e-35
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = -3
Query:  197 STEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 445
            S+++D KTWD+EF+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPE IRKTFNIK DF P+EEE V RENQWAFE
Sbjct:   89 SSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.631e-32
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:  197 STEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 445
            +++DD K WDA+F+K+DQ TLF+LILAANYLNIK LLDLTCQTVADMIKGKTPE IR TFNIK DF P+EEE V RENQWAFE
Sbjct:   78 TSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = -3
Query:  197 TEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 442
            +E+D   WD +F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPE IR TFNI+ DF P+EEE V +ENQWAFE
Sbjct:   71 SEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.094e-28
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  197 TEDDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 442
            +E+D   WD +F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPE IR TFNI+ DF P+EEE V +ENQWAFE
Sbjct:   71 SEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN189169 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.429e-28
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  197 KDDKSTE---DDFKTWDAEFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEGIRKTFNIKKDFFPDEEEGVWRENQWAFE 457
            +DD++ E   DD   WD EF+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPE IRKTFNIK DF  +EE  V +ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CN189169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1B_ARATH2.058e-3584.34SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.631e-3278.31SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK11_ARATH2.879e-2970.73SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.094e-2869.51SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA5.429e-2867.78S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT5.429e-2867.78S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB5.429e-2867.78S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE5.429e-2867.78S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA5.429e-2867.78S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN5.429e-2867.78S-phase kinase-associated protein 1 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189169 ID=CN189169; Name=CN189169; organism=Citrus sinensis; type=EST; length=471bp
TTTTTTTTTTTTTTTTTCCCTTAAACAAGGGTTCAATGACATTTATATCG
AGCAGCATTCCCAGGTTCACAACAAAAGGAAATGTTGATGTTCAATACTA
AACCCCTACGGGCAACATACTAAAAAACCCCTATCTTTATAACGACTTTC
CTATCACAAATATTAATGACCGAGCCTTCATCACTTCAGTCCTTCACTCA
AAGGCCCATTGGTTCTCTCTCCAAACCCCCTCTTCTTCATCGGGAAAAAA
GTCTTTCTTGATGTTGAAGGTCTTGCGAATCCCCTCTGGAGTCTTCCCCT
TGATCATGTCTGCAACAGTTTGGCAGGTCAAGTCCAGCAAACCCTTAATG
TTCAGGTAATTGGCTGCCAAAATTAGGTCAAAAAGGGTATTCTGATCAAC
CTTGACAAATTCTGCATCCCAGGTCTTGAAATCATCCTCGGTCGACTTGT
CGTCCTTCTTGTCCCCTGACC
back to top