CN189155

Overview
NameCN189155
Unique NameCN189155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189155_ssr248 microsatellite CN189155_ssr248:248..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = -2
Query:  307 ATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 705
            ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG  I      V+EN  EGN   RL++YAAMFMSIRPHDHLE
Sbjct:  588 ATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 72/136 (52.94%), Postives = 95/136 (69.85%), Query Frame = -2
Query:  319 VLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 696
            +L PG F GDELLSWCLRRPF++RLP SS+T V +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+          +R R P+      GE    ++L  YAA+  S +P+
Sbjct:  556 MLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  343 LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 693
            L PG F G+ELL+W L       LP+S+ T   +E +EAF L A +L+++ + FR +  +++L+ T RYYS  WRTWAA  +Q AWRRY+ +     +S+ E+    +    +  AA
Sbjct:  544 LRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = -2
Query:  370 VLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 696
            +L PG F G+ELLSW L       LP+S+ T   +  +EAF L A++L+++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY+ R     ++  E+ E  E
Sbjct:  543 ILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  379 VLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 696
            +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWA+  IQ AWRRY  R    +  + E  E
Sbjct:  564 LLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  373 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY-RMRTRGPVISVTENGEGN 699
            S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA+ IQ AWRRY + +    +    E GEG+
Sbjct:  574 SLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGS 682          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  385 TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTEN 702
            ++ L PG F G+ELL+W L       LP+S+ +   +  +EAF L A++L+++   F+ +  +++L+   RYYS  WR W A  +Q AWRRY+ R     +S+ E+
Sbjct:  509 STTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELSLHES 613          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  412 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 699
            S+L+ G F GDELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA  +Q AWRRY  R +
Sbjct:  575 SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  418 VLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 696
            +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  570 LLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CN189155 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  412 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 699
            S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L ++ L+++   FR +  + +++ T R+YS  WRTWAA  IQ AWRRY  R +
Sbjct:  559 SLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653          
The following BLAST results are available for this feature:
BLAST of CN189155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CNGC2_ARATH1.597e-5778.42Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH2.244e-3552.94Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG14_ARATH1.461e-1838.46Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG17_ARATH4.252e-1841.28Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC7_ARATH6.788e-1637.74Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC9_ARATH1.512e-1539.09Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG18_ARATH1.512e-1535.85Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC6_ARATH3.369e-1541.67Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC8_ARATH5.747e-1540.86Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC5_ARATH1.280e-1440.63Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189155 ID=CN189155; Name=CN189155; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTTTACCTTCAAATAGTCTTCAACTTTTTTATTAATC
CCAAATAATTTATTTTAAAAAAAAAATTCATTCAAATATGATTAACTAAT
GACTGAGAAATCTAGCTTGCTTTCTTATCATTCATCTGCTAGCAAAATCC
TGAACTAGGAAAGAATTTCCCCCCCTTTTTCTTTTATTTCAAATCCAATT
GTCTAAATCGAGTGCAAGTTCGATGTTCCATGGCTAAATTGCTACCCAAA
GAAAAGAAAAGAAACTTTATTCATCAATGGAAGAATTGCACGACACGGTG
TGCTTATTCAAGGTGATCATGTGGTCTAATTGACATGAACATAGCAGCAT
ATCTCATAAGTCTGTTGCTCTCATTGCCTTCTCCATTTTCAGTTACAGAA
ATCACAGGACCTCTAGTCCTCATCCTGTATCTTCTCCAAGCAAATTGAAT
ATTCACAGCCGCCCATGTCCTCCAATTTGATGAATAATATCTCGCGGTTC
TCTTCAGCCTTTCGTTGGCAAATTTGTACCGGAAATGATCTGTGATGTAT
CGGAGATTCTTTGCATCTAACCCAAATGCTTCTATGGATTCCATACAAAC
AAATGTTGCTGATGATGCTGGCAGCCGATCGATAAACGGGCGGCGTAGGC
ACCAAGAAAGCAACTCATCACCCAGAAACCCTCCTGGTTCAAGCACACTT
GTTGCT
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