CN189149

Overview
NameCN189149
Unique NameCN189149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:1149..1902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189149 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.078e-46
Identity = 94/136 (69.12%), Postives = 110/136 (80.88%), Query Frame = -3
Query:  348 KPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVXXXXXXXXXXXA-GSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK-AKV 749
            KPDFEPIAA+GIEIWTMQDGILFDN+LI+ D+KVAESYR + WKPKF V           A GSDG++GFQK VFDLLYK+ADIPFL  +K KI D+IEK EKQPNLTIGILV+VV V +++ F++IFGGKK AKV
Sbjct:  368 KPDFEPIAAIGIEIWTMQDGILFDNVLIANDDKVAESYRETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPAKV 503          
BLAST of CN189149 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = -3
Query:  348 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-SDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKV 752
            ++P+ EPIAA+GIEIWTMQDGILFDNILISKDEKVAE+YR S WKPKFDV           AG +DGL  +QK VFDLLYKVADI FL AYK KI+++IEK E QPNLTIG+L+S+V V +++ FK+IFGG KAKV
Sbjct:  360 ERPNLEPIAAIGIEIWTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKV 495          
BLAST of CN189149 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.721e-44
Identity = 89/134 (66.42%), Postives = 106/134 (79.10%), Query Frame = -3
Query:  354 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVXXXXXXXXXXXAGS-DGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 752
            D+PD+EPIAA+GIEIWTMQDGILFDNILI+KDEKVAE+YR + WKPKFDV           AGS DGL  +QK VFDLL KVAD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V  ++  K+IFGGKKA
Sbjct:  358 DRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKA 491          
BLAST of CN189149 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 87/139 (62.59%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  357 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVXXXXXXXXXXXAG-------SDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK 752
            +KPDFEPIAA+GIEIWTMQDGILFDN+LI+KD+K+AESYR + WKPKF++           A        S+G+AG QK  FDLLYK+ADI FL   K KII++IEKGEKQPNLTIGI+VSVV V +++ F++IFGGKK
Sbjct:  366 EKPDFEPIAAIGIEIWTMQDGILFDNVLIAKDDKIAESYRETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKK 504          
BLAST of CN189149 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.796e-32
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = -3
Query:  354 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY------RASAWKPKFDVXXXXXXXXXXXAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 752
            +KP+FEPIAA+GIE    QDGILFDNILI+ DEK A         R+  WK +                 DGL G QK VFD+LYK+AD+PFL  +K+K++++IEK E QPN+TIG++VS++ VI ++L K++FGGKKA
Sbjct:  362 EKPNFEPIAAIGIEDLDQQDGILFDNILIASDEKTAAKSGILLGSRSLRWKKR------NRRLKKNQPLLDGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKA 494          
The following BLAST results are available for this feature:
BLAST of CN189149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CALX_SOYBN1.078e-4669.12Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX2_ARATH5.350e-4667.65Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX1_ARATH1.721e-4466.42Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_PEA2.248e-4462.59Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX_HELTU9.796e-3250.36Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001G09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189149 ID=CN189149; Name=CN189149; organism=Citrus sinensis; type=EST; length=754bp
GAGGCTTCAATGCAGAAAACGAATCATCTCAGCATTAGACTGTCTCAAAT
TATACACTCTTTCATACATTTTAGTGTTTCAAAACAAAGCTCAAAAAGAA
CGAAAAAGAAGAAGAAAAAAAAGGAAAAAGCCAAGAATCCAGCTAGGGAA
AACAACTAAGCTGATAATCTACCAAAAGTGCAGCTAATAGCCACAGGCAT
CCTGCTTCCATTTGTTTAATTCTCGCGTCTCCTCCGACGAGCAGGAGCAG
CAGCAGTTTCTTCCTTCTCGGTCTCTTCTTCCTTTTCACCACTGTCCTCT
TGTTTGCTCGAGGAACTCTCTGCAGCTTCTGTTTCTTTTGGGGGCTCTAC
TTTAGCCTTCTTTCCACCAAAAATGATCTTGAACAGAACTGTAATGATCA
CCGCCACAACGGAGACAAGGATACCAATTGTAAGGTTTGGTTGTTTCTCT
CCCTTCTCAATCACATCAATGATCTTAAGTTTGTATGCATCCAAGAAAGG
AATGTCTGCAACCTTGTACAAGAGATCAAATACCGTCTTCTGGAAGCCTG
CAAGGCCATCTGAACCAGCAGCTGCTTCCTCAGCCTTCAGTTTCTCTTTC
TCAACATCAAACTTAGGCTTCCATGCAGAAGCCCGATAGGACTCTGCAAC
TTTCTCATCCTTTGATATCAAAATGTTGTCAAACAAAATACCATCCTGCA
TTGTCCAGATCTCAATGCCGACAGCAGCAATAGGCTCAAAGTCAGGTTTG
TCAA
back to top