CN189148

Overview
NameCN189148
Unique NameCN189148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:685..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.332e-43
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = -2
Query:  393 PPFPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 656
            PP PT PP VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  357 PPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 65/95 (68.42%), Postives = 81/95 (85.26%), Query Frame = -2
Query:  372 PPFPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 656
            PP P KPP  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  365 PPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = -2
Query:  369 PPFPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 656
            PP P KPP  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  246 PPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.006e-31
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  396 PPFPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 656
            PP P+ P  VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  376 PPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = -2
Query:  393 PPFPT-KPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 656
            PP P   PP  CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  384 PPSPAPSPPQQCDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CN189148 vs. ExPASy Swiss-Prot
Match: GRN_MOUSE (Granulins OS=Mus musculus GN=Grn PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 31/70 (44.29%), Postives = 37/70 (52.86%), Query Frame = -2
Query:  447 PPFPTKPPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLM 656
            P +P K    CD   SCPE  TCC +     +  AWGCCP   A CC+DH  CCP  +  C+   GTC M
Sbjct:  273 PGYPVKE-VKCDMEVSCPEGYTCCRL-----NTGAWGCCPFAKAVCCEDHIHCCPAGFQ-CHTEKGTCEM 335          
The following BLAST results are available for this feature:
BLAST of CN189148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.332e-4376.14Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH5.684e-4368.42Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC1.449e-3865.63Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.006e-3162.07Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.555e-2448.39Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GRN_MOUSE7.492e-1144.29Granulins OS=Mus musculus GN=Grn PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189148 ID=CN189148; Name=CN189148; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTTAATTCAAATGTTCGTGATTCAAGAAAAATCGTT
AAATATCAATTCATAAAAGCCTCCGCTGAATGACGCCAGGGATTTGGTAA
AGGACATTGGAAATAGATAACAACAATTTGTTTGTGCATTGTTCAAATTC
AACGCAAATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATA
AATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAA
TGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAAT
ATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAA
TTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAG
CAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATC
AAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCA
GCTATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCC
ATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTC
TCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAAA
TGGAGGG
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