CN189146

Overview
NameCN189146
Unique NameCN189146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1390..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189146 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.982e-19
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  196 AALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 354
            AALG+AN DAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  420 AALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CN189146 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.862e-18
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = -2
Query:  193 AALGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 354
            AALG+AN DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  411 AALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CN189146 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = -2
Query:  193 AALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 354
            AALG+AN+DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  410 AALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CN189146 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = -2
Query:  190 AALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 354
            AALG+AN+DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CN189146 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.203e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = -2
Query:  196 AALGEANEDAIQSGNFYG-KAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 354
            AALG+AN DAI+ G FYG +AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  420 AALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
The following BLAST results are available for this feature:
BLAST of CN189146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH1.982e-1979.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.862e-1874.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.738e-1872.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.883e-1870.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.203e-1676.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189146 ID=CN189146; Name=CN189146; organism=Citrus sinensis; type=EST; length=355bp
TTTTTTTTTTTTTTTTTAATAATGGTAAGAAGGAGCACCTTTTCCTTTAT
AGAATAAAGAGTTGTGATATAACACAAAATTAGAGGATTCTTTCTGATTA
AAAAAGAAATGAAAATGCAACAATATTATTTGAATATCTCACATCCTAAG
CAAAGTGCGACACTTCTCAACCCTTAAAAACAAGGCCTAAAGCGTGTATT
GGCAGCTTCCATCATCACTTCTTGCAGTTGGATCAAAGTTTTCTGCAGTA
GGATCAGTACATCCTTCAGGAACTGGAACATTCATTTGCTGGGCTGCTTT
GCCATAAAAATTTCCACTCTGAATAGCATCTTCATTAGCTTCACCAAGAG
CGGCC
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