CN189145

Overview
NameCN189145
Unique NameCN189145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:84..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189145 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = 2 
Query:  104 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 535
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CN189145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.496e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189145 ID=CN189145; Name=CN189145; organism=Citrus sinensis; type=EST; length=745bp
GAGGCTCTTTCTCTCTCTTTCTCTCTCCTAGGGTCAGGTTTCTTTCCTTT
GTCTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGATGTCCAGGAGGTT
CAGAATGGAGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGCCAGCTTCAC
GGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCTG
TTCAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTG
GAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCA
ACTCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGACT
CTGCTGCTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCTTGGAGACC
GAGGACGTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTGC
TGAGGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGAGCGCGTGG
GAAAGGTCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCTCCCCGGTC
AAGAAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCGGATCTGATCTTTAG
ATATTGATCTACTATCACATAACTCTCTTTTGTCGTTCGTCTTTACTGCT
GTGGGTTTATAGCTCTAGGCTCTTTTAGTATTTCGGATATCTTGATGATA
TTGCTGAACGTTGATCGTGATGATGGGATGTTTTTTGATTAATTT
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