CN189143

Overview
NameCN189143
Unique NameCN189143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189143_ssr72 microsatellite CN189143_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.638e-37
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 2
Query:   71 EKKKIFTRKMGHWTTKETQRIKQKLEPVKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 442
            E+K ++T+  G     +    K+K    KAC FILGNECCERLAYYGM TNLV Y + +L+Q ++TA+ NV + SGTCYITPLIGAF+ADAYLGRYWTIA F  IYV GMT LT++ASV GLKP
Sbjct:    2 EEKDVYTQD-GTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 2
Query:   71 EKKKIFTRKMGHWTTKETQRIKQKLEPVKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHG 454
            + K I+T K G     +    K K    KAC FILG ECCERLAYYGMSTNL+ Y + Q++  + +ASK+V + SGTCY TPLIGAF+ADAYLGRYWTIA F +IY+ GMT LT++ASV GL P C G
Sbjct:    3 DDKDIYT-KDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSG 129          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  131 IKQKLEPVKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 442
            +K+K    KACPFILGNECCERLAYYG++ NL+ Y   +L Q + +A+ NV    GTCY+TPLIGA LADAY GRYWTIA FS IY IGM+ LT++ASV  LKP
Sbjct:   38 LKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKP 141          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.382e-23
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  155 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 442
            KAC F++  E  ER+AYYG+S+NLV Y   +L Q +  +S NV +  GT ++TP++GA++ADA+ GRY T  I S IY++GM  LT++ S+ GLKP
Sbjct:   32 KACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKP 127          

HSP 2 Score: 31.187 bits (69), Expect = 1.382e-23
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:   73 EEEDIYTKDGTLDYKGNPADKTKTG 147
            E  D YTKDGT+D +GN   +++TG
Sbjct:    5 EVGDDYTKDGTVDLRGNRVRRSQTG 29          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-20
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  155 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 442
            KAC F++  E  ER+AYYG+S+NL  Y   +L Q +  +S NV +  GT ++TP++GA++ DA LGRY T  I   IY  GM  LT++ ++ G+KP
Sbjct:   32 KACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKP 127          

HSP 2 Score: 30.4166 bits (67), Expect = 1.293e-20
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:   73 EEEDIYTKDGTLDYKGNPADKTKTG 147
            E  D YTKDGT+D +GNP  ++  G
Sbjct:    5 EVGDDYTKDGTVDLQGNPVRRSIRG 29          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.841e-14
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  170 ILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKP 442
            IL  E  ERL   G+  NLV Y    +   ++TA+  V +  GT ++  L+G F+AD +LGRY TIAIF+ I   G++ LT++  + GL+P
Sbjct:   37 ILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRP 127          

HSP 2 Score: 24.6386 bits (52), Expect = 8.841e-14
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  109 DYKGNPADKTKTG 147
            D++G PAD++KTG
Sbjct:   17 DFQGRPADRSKTG 29          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: S15A1_MOUSE (Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  167 FILGNECCERLAYYGMSTNLVRYFKHQL--DQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA 421
            FI+ NE CER +YYGM   LV YF++ L  D + STA  +       CY+TP++GA +AD++LG++ TI   SI+Y IG   ++V++
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTF--VALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVISVSS 102          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: S15A2_RAT (Solute carrier family 15 member 2 OS=Rattus norvegicus GN=Slc15a2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  167 FILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA 421
            FI+ NE CER +YYGM   L  YF + L  +  T++      S  CY TP++GA +AD++LG++ TI   S++YV+G  F ++ A
Sbjct:   48 FIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGA 132          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: S15A2_MOUSE (Solute carrier family 15 member 2 OS=Mus musculus GN=Slc15a2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  167 FILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA 421
            FI+ NE CER +YYGM   L  YF + L  +  T++      S  CY TP++GA +AD++LG++ TI   S++YV+G  F ++ A
Sbjct:   48 FIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGA 132          
BLAST of CN189143 vs. ExPASy Swiss-Prot
Match: S15A1_RAT (Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  167 FILGNECCERLAYYGMSTNLVRYFKHQL--DQSSSTASKNVLDCSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTA 421
            FI+ NE CER +YYGM   LV YF++ L  D   STA  +       CY+TP++GA +AD++LG++ TI   SI+Y IG   ++V++
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDDLSTAIYHTF--VALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVISVSS 102          
The following BLAST results are available for this feature:
BLAST of CN189143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PTR1_ARATH2.638e-3762.10Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH1.710e-3658.59Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH4.358e-3263.46Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3B_ARATH1.382e-2348.96Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR3A_ARATH1.293e-2044.79Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
CHL1_ARATH8.841e-1440.66Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
S15A1_MOUSE2.656e-1343.68Solute carrier family 15 member 1 OS=Mus musculus ... [more]
S15A2_RAT3.469e-1341.18Solute carrier family 15 member 2 OS=Rattus norveg... [more]
S15A2_MOUSE3.469e-1341.18Solute carrier family 15 member 2 OS=Mus musculus ... [more]
S15A1_RAT3.469e-1343.68Solute carrier family 15 member 1 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189143 ID=CN189143; Name=CN189143; organism=Citrus sinensis; type=EST; length=458bp
TGAATAGATCTCTACCAAAATAAAGATAGAAAGAAATAATCCAGCTTTCA
AGTACCTGATAAAGCGATGGGAGAAGAAGAAGATATTTACACGAAAGATG
GGACATTGGACTACAAAGGAAACCCAGCGGATAAAACAAAAACTGGAACC
TGTGAAGGCCTGCCCCTTTATTTTAGGAAATGAATGTTGTGAAAGATTGG
CATACTATGGGATGAGCACAAATCTGGTGCGTTACTTCAAGCACCAGTTA
GATCAGAGCAGTTCTACAGCTTCTAAAAACGTCTTGGACTGCAGTGGAAC
ATGCTACATCACGCCATTGATTGGTGCTTTTCTGGCTGATGCATATCTTG
GAAGATACTGGACCATTGCCATTTTCTCAATCATTTATGTTATTGGAATG
ACTTTTCTAACGGTGACGGCATCAGTCTCTGGCTTAAAGCCAGTATGTCA
TGGTCCTC
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