CN189140

Overview
NameCN189140
Unique NameCN189140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length247
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:147..393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189140 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   61 MSDTCGNCDCADRSQCVKNGSIYAADFL*TDLSFVITVVVMDDHAADTEGNCKCGPTCACVN 246
            MSDTCGNCDCAD++QCVK GS Y AD + T+ S  I  VVMD  AA+ +G CKCGP+C+C N
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKS--IMTVVMDAPAAENDGKCKCGPSCSCTN 60          
BLAST of CN189140 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.939e-13
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   70 TCGNCDCADRSQCVKNGSIYAADFL*TDLSFVITVVVMDDHAADTEGNCKCGPTCACVN 246
            TCGNCDC D+SQCVK G+ Y  D + T+ S+V  V+V  + AA+ +G CKCG  CAC +
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAE-AAEHDGKCKCGAACACTD 60          
BLAST of CN189140 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   61 MSDTCGNCDCADRSQCVKNGSIYAADFL*TDLSFVITVVVMDDHAADTEGNCKCGPTCACVN 246
            MSD CGNCDCAD SQCVK G+  + D + TD S+ I  VVM   AA++ G CKCG +C CVN
Sbjct:    1 MSDKCGNCDCADSSQCVKKGN--SIDIVETDKSY-IEDVVMGVPAAESGGKCKCGTSCPCVN 59          
BLAST of CN189140 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   61 MSDTCGNCDCADRSQCVKNGSIYAADFL*TDLSFVITVVVMDDHAADTEGNCKCGPTCACVN 246
            MS  C NCDC+D SQC K G  +    + T+   + TV+ MD  AA+  GNCKCGP+CACV+
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVD 61          
The following BLAST results are available for this feature:
BLAST of CN189140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MT3_CARPA1.070e-1762.90Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.939e-1352.54Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.354e-1258.06Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.335e-1150.00Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189140 ID=CN189140; Name=CN189140; organism=Citrus sinensis; type=EST; length=247bp
TCGTACAATAAAGAGCCCTCTATTTCCGGTTTTAAATTCCAAGTTCTAAG
CTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGGA
GCCAGTGTGTGAAGAATGGAAGCATCTATGCTGCTGACTTCCTCTAGACT
GACTTGAGCTTTGTCATCACCGTTGTTGTCATGGACGATCATGCTGCTGA
TACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACT
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