CN189135

Overview
NameCN189135
Unique NameCN189135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189135 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.146e-38
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = -1
Query:  322 VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLFRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 570
            V+RADRR+EKYFRRGA+LDWP+GATSRDS++AVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP ER KAREAL HPFFTR
Sbjct:  363 VLRADRRSEKYFRRGAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTR 445          
BLAST of CN189135 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.643e-29
Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = -1
Query:  322 RADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLFRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 564
            + DR +EKY RRG RLDWPDGATSRDS++AV KL RL NLIMQHVDHSAG+LI+++QGLLR+DP+ER+ AREALRHPFF R
Sbjct:  346 KVDRHSEKYVRRG-RLDWPDGATSRDSLKAVLKLPRLQNLIMQHVDHSAGELINMVQGLLRFDPSERITAREALRHPFFAR 425          
BLAST of CN189135 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = -1
Query:  328 RADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLFRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 564
            +A R AEKYFRRG RL+WP+GA SR+S+RAV +L RL +++ +HVD++     DLL GLL YDP+ERL A EAL HPFF
Sbjct:  318 KASRGAEKYFRRGCRLNWPEGANSRESIRAVKRLDRLKDMVSKHVDNTRSRFADLLYGLLAYDPSERLTANEALDHPFF 396          
The following BLAST results are available for this feature:
BLAST of CN189135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AFC1_ARATH7.146e-3887.95Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC2_ARATH4.643e-2975.31Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC3_ARATH2.089e-2160.76Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189135 ID=CN189135; Name=CN189135; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGGAAACGGATCACATTACANATCCATTTTCTCT
CTTAACGAATATCACAAAGCCAACCTGAAACTCCTTTGTGGGGATACACA
TTCAATTACACATTAATAGTGCCGAAAGAAACGAAACAAGACAGGGTGGT
GCAGAAACATAAATTTTACTATACAAACAGCAATCGTATAAAAAAGAGAC
AATAGAATATCATTCACCACGTGCATGGCTGTGTATTATTTCTTTTCTAA
AATTGAACAAGCTCGTCAATAGCAAAGACGAGGCTTTGCAATTACAAGGG
AAAGCCACACCTTCTCACATCTCTCGTGAAGAAAGGATGTCTTAGGGCTT
CCCTGGCTTTGAGCCGCTCTGCTGGATCATATCGGAGGAGCCCCTGAAGG
AGATCAATCAAATCACCGGCAGAGTGATCTACATGCTGCATTATCAGGTT
CGGGAGACGGAAAAGTTTCCAAACTGCCCTCATGCTATCTCTCGAAGTAG
CACCATCAGGCCAATCCAGTCGTGCACCTCTCCTAAAATATTTCTCAGCA
CGGCGGTCAGCTCTGATCAC
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