CN189134

Overview
NameCN189134
Unique NameCN189134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6864 contig Csv1_Contig6864:173..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189134 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.065e-27
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = -2 
Query:  252 ASFSVVMVTLVSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXGSLLGFYFKLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 677
            A  SVV+V + + +IS +  +I+L  R  +S AFT    V AAVSDL PLLA+++ LNGIQP+LSGVA+G GWQ                  G +LGF   LG  GIW GMI G ++QTL LI +T +T+W  EV+ A +R+
Sbjct:  351 AMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
[Close]
BLAST of CN189134 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 42/132 (31.82%), Postives = 59/132 (44.70%), Query Frame = -2 
Query:  252 VSFVISVMAAIIILALRDVISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXGSLLGFYFKLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 647
            ++  IS+    +I   RDV    FT    V A V D+ P+L+L ++ +G+  V  G+  G G Q                     +  YF  G KGIW GMI  +V        V F TDW++ +QEA  RL
Sbjct:  399 LALCISIFDGSLIFCFRDVWGSLFTSDPEVLAVVKDIFPILSLFIVTDGLNAVGGGLLRGTGKQYIGGLISIGSSYLFALPVTVFVVVYFNTGLKGIWCGMILSSVTAITCQFTVLFNTDWHRVLQEARHRL 530
The following BLAST results are available for this feature:
BLAST of CN189134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH2.065e-2745.77Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YL47_SCHPO1.216e-1131.82Uncharacterized transporter C323.07c OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001F24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189134 ID=CN189134; Name=CN189134; organism=Citrus sinensis; type=EST; length=678bp
GAGGGGAAGACCAAAAAAATAGAAGATTTTATTTGCCATACAGGCAGGCA
GCCTTTACATTCTCGGCCATGGACTGAGTAGGCCATACGACATGAGGAAT
TTTTGTGCCCAATCGAGCAAAATATCAGAAATTAAGGTCGCTTGCACTTT
TTATTTTGCGAGTTTCGAACCAAGTTCATCGACCTATTTGTAAATCCTTG
CCTCTAATTTCCTCATTCTAGAAGAGGCTTTTTCTTGTCCTCCCACTTAT
CCAATCTCTTCAGGGCTTCTTGTACCTCTTTATTCCAGTCTGTTCGAAAT
GTCACCCATATTAGAATTAAAGTTTGCATCACCGTGCCGCCAATCATCCC
AGACCATATTCCCTTAGCGCCGAGTTTGAAGTAGAAACCGAGAAGTGAAC
CCACTGGAACCCCAACGACGTAATAGCATCCCACGTTCACATACGCCACA
AATGTTTGCCATCCGCACCCAACAGCCACACCGGACAAGACAGGCTGGAT
GCCGTTAAGAATCAGGGTCAAAGCAAGAAGCGGACAGAGGTCGGAGACTG
CTGCGGCAACCGCTTCGCCTCCAGTGAAGGCGTAGCTGATGACATCACGT
AGGGCTAGAATGATTATCGCCGCCATCACGGAGATCACGAAGGACACTAA
CGTCACCATTACCACTGAAAACGACGCC
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