CN189093

Overview
NameCN189093
Unique NameCN189093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP7M_SOLTU (Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 72/154 (46.75%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  229 LARNFSSKSQGN-VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            LAR FSSK  GN ++GIDLGTT S VAVM+G++P VIE  EG R T       PSVV F   GE  VG  A       P+  L  TK L+G  +D  + Q  +     KIVRG  G+AWVE     +SP +I AFIL KM+   E YL +S  K
Sbjct:   46 LARPFSSKPAGNEIIGIDLGTTNSCVAVMEGKNPKVIENSEGARTT-------PSVVAFNQKGELLVGTPAKRQAVTNPTNTLSGTKRLIGRRFDDPQTQKEMKMVPYKIVRGSNGDAWVEANGQQYSPTQIGAFILTKMKETAEAYLGKSINK 192          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 72/173 (41.62%), Postives = 95/173 (54.91%), Query Frame = 1
Query:  172 SPEPKFVPAMHHCLVSSMSLARNFSSKSQGN-VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            S +P +V     CL      AR FSS+  GN V+GIDLGTT S V+VM+G++P VIE  EG R T       PSVV F   GE  VG  A       P+  +F TK L+G  +D  + Q  +     KIV+   G+AWVE     +SP++I AF+L KM+   E YL +S +K
Sbjct:   27 STKPAYVAQKWSCL------ARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTT-------PSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSK 186          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP7F_CAEEL (Heat shock 70 kDa protein F, mitochondrial OS=Caenorhabditis elegans GN=hsp-6 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 64/151 (42.38%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  217 SSMSLARNFSSKSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            SS+  AR+ S K +G+V+GIDLGTT S V++M+G+ P VIE  EG R T       PS V F  +GE  VG  A        +  LF TK L+G  Y+  +VQ  L     KIV+   G+AWVE +  ++SP+++ AF+L KM+   E YL
Sbjct:   17 SSLMSARSLSDKPKGHVIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTT-------PSTVAFTADGERLVGAPAKRQAVTNSANTLFATKRLIGRRYEDPEVQKDLKVVPYKIVKASNGDAWVEAQGKVYSPSQVGAFVLMKMKETAESYL 160          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  226 SLARNFSSKSQGN-VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            SL R FSS+  GN V+GIDLGTT S V+VM+G++P VIE  EG R T       PSVV F    E  VG  A       P+  LF TK L+G  +D ++ Q  +     KIVR   G+AWVE     +SP++I AF+L K++   E YL ++ +K
Sbjct:   40 SLTRPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTT-------PSVVAFNQKSELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKIKETAEAYLGKTISK 187          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: HSP77_YEAST (Heat shock protein SSC1, mitochondrial OS=Saccharomyces cerevisiae GN=SSC1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 66/154 (42.86%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  211 LVSSMSLARNF-SSKSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYL 660
            L SS  +A    S+K QG+V+GIDLGTT S VA+M+G+ P +IE  EG R T       PSVV F   GE  VG  A     + P   LF TK L+G  ++ ++VQ  +     KIV+   G+AWVE     +SPA+I  F+L KM+   E YL
Sbjct:   13 LSSSFRIATRLQSTKVQGSVIGIDLGTTNSAVAIMEGKVPKIIENAEGSRTT-------PSVVAFTKEGERLVGIPAKRQAVVNPENTLFATKRLIGRRFEDAEVQRDIKQVPYKIVKHSNGDAWVEARGQTYSPAQIGGFVLNKMKETAEAYL 159          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 66/150 (44.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  235 RNFSSKS-QGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESA 672
            R+++S++ +G V+GIDLGTT S VAVM+G+   V+E  EG R T       PSVV F P+GE  VG  A       P+   + TK L+G  YD  +VQ  T   P KIVR   G+AWVE    ++SP++I AF+L KM+   E YL  +A
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTT-------PSVVAFTPDGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTA 186          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 65/143 (45.45%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  259 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            G V+GIDLGTT S VAVM+G  P VIE  EG R T       PS+V F   GE  VG+ A       PSR  F  K L+G  YD    Q    L P  IVR   G+AWVE +   FSP++I AF L KM+   E YL +  T+
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGTQPKVIENAEGARTT-------PSIVAFTDEGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRAGNGDAWVEADGKQFSPSQISAFTLQKMKETAESYLGQPVTQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 62/141 (43.97%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  265 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDS--SKVQTSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATK 678
            V+GIDLGTT S VAVM+G  P VIE  EG R T       PS+V F  +GE  VG+ A   +   P R  F  K L+G  YD   +K    L P KI+R   G+AWVE +   +SP++I AFIL KM+   E YL +  ++
Sbjct:    4 VIGIDLGTTNSCVAVMEGTTPKVIENAEGARTT-------PSIVAFTDDGERLVGQPAKRQSVTNPERTFFAIKRLIGRTYDDPMTKKDMGLVPYKIIRASNGDAWVEADGKQYSPSQISAFILQKMKETAEAYLGQPVSQ 137          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  235 RNFSSKS-QGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQTSLYP---KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESA 672
            R+++S++ +G V+GIDLGTT S VAVM+G+   V+E  EG R T       PSVV F  +GE  VG  A       P+   + TK L+G  YD  +VQ  +     KIVR   G+AWVE    ++SP++I AF+L KM+   E YL  +A
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTT-------PSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTA 186          
BLAST of CN189093 vs. ExPASy Swiss-Prot
Match: GRP75_MOUSE (Stress-70 protein, mitochondrial OS=Mus musculus GN=Hspa9 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:  235 RNFSSKS-QGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTVYDSSKVQ--TSLYP-KIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESA 672
            R+++S++ +G V+GIDLGTT S VAVM+G+   V+E  EG R T       PSVV F  +GE  VG  A       P+   + TK L+G  YD  +VQ  T   P KIVR   G+AWVE    ++SP++I AF+L KM+   E YL  +A
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTT-------PSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTA 186          
The following BLAST results are available for this feature:
BLAST of CN189093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7M_SOLTU4.344e-2546.75Heat shock 70 kDa protein, mitochondrial OS=Solanu... [more]
HSP7M_PHAVU2.156e-2441.62Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
HSP7F_CAEEL8.193e-2442.38Heat shock 70 kDa protein F, mitochondrial OS=Caen... [more]
HSP7M_PEA2.384e-2343.23Heat shock 70 kDa protein, mitochondrial OS=Pisum ... [more]
HSP77_YEAST4.066e-2342.86Heat shock protein SSC1, mitochondrial OS=Saccharo... [more]
GRP75_RAT9.058e-2344.00Stress-70 protein, mitochondrial OS=Rattus norvegi... [more]
DNAK_METS43.442e-2245.45Chaperone protein dnaK OS=Methylobacterium sp. (st... [more]
DNAK_METSB5.871e-2243.97Chaperone protein dnaK OS=Methylocella silvestris ... [more]
GRP75_PONAB7.668e-2242.00Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]
GRP75_MOUSE7.668e-2243.33Stress-70 protein, mitochondrial OS=Mus musculus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001E23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189093 ID=CN189093; Name=CN189093; organism=Citrus sinensis; type=EST; length=678bp
CCAGAATGTNCATCCACAGCTAAAGAAGCACAAGAACAAGCAATACCAAA
CCCATTGGAGAAATATGAGCAGCTTTGTGAGCTCAGTCGTGCTTATCCAT
TGGCTAAGACTTCTGCCTCTTCCGTCAGCCAGGGATGCAGGGAGTTCTTG
AAACTTGCCAACAAGGTTGTAAGTCCAGAACCCAAATTTGTTCCAGCAAT
GCATCACTGTCTAGTCTCATCTATGAGTTTGGCACGCAATTTCAGTTCTA
AATCTCAGGGAAATGTTCTTGGCATTGATCTTGGAACTACATATTCTCGT
GTTGCAGTTATGCAAGGAGAAGATCCCGTGGTGATTGAAGAGGTAGAAGG
TGGCAGATATACTAAGAAGTCATTTCGATCGATGCCTTCAGTAGTGTTCT
TTAAACCCAATGGGGAGTCATGGGTCGGTAGACAAGCAAATATGATGACA
TCTCTGTACCCATCCCGCGCACTGTTTGATACCAAACATTTGGTGGGTAC
AGTGTATGATAGTAGTAAAGTTCAAACAAGTCTCTACCCGAAGATTGTAA
GGGGTTTTAAAGGAGAGGCATGGGTGGAGACGGAATTCGGCATATTCTCT
CCGGCTAAGATACAAGCATTCATCTTAGCCAAAATGAGAGCAATTGGCGA
AGTTTATTTGAAAGAGTCTGCTACAAAG
back to top