CN189090

Overview
NameCN189090
Unique NameCN189090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189090 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3 
Query:  120 MG*ATLVFVFYSNAFASLVLLPASLLFHRSLIPPLTLPVLSAFFLLGFLGTSSQFFGYA-GIYYSSPTLSTAMLNLVPGFTFILAIIFGMEKLDWKSSSSLAKSVGTILLITGAFIMTYYKGPHLLMTSSPP-NLSLQFF---------MPHTNWVIGGLLLAIDCVFTSAWLIVQASILEKFSAELIVVFFYCFFVAIQSAIL 698
            MG + +VF  Y N  A +++ P +    +   P LTL  L  FFLL   G + Q    +  I    PT ++A+ N VP  TFI+A    +EK+       LAK +GT+  ++GA I+T YKGP +     P   ++  +F             NW +G + L  +C+  S W+++QA +L+++ A L V  F CFF  IQ  I+
Sbjct:   43 MGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLII 246
The following BLAST results are available for this feature:
BLAST of CN189090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA7.304e-2332.84Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189090 ID=CN189090; Name=CN189090; organism=Citrus sinensis; type=EST; length=698bp
GACGTCAAACGGAGCGAGAGAAGAAATGGGAAAAGTTGGTTTAGCTCCAG
TTATTGGGATGATGATGGCAGACTGCGCTCTTGTTGGGCTGATGTTTGCC
GCCAAAGCAACCATGTCTAATGGGATGAGCAACCTTGGTCTTCGTTTTTT
ATTCCAACGCATTCGCCTCTCTCGTTCTCCTCCCCGCTTCACTTCTCTTC
CACAGATCTTTAATTCCTCCACTCACTTTGCCTGTTCTATCTGCTTTCTT
CCTACTTGGCTTTCTTGGTACTTCGTCTCAGTTTTTTGGCTACGCTGGGA
TTTACTATAGCTCACCTACACTTTCCACGGCTATGCTTAATCTTGTTCCG
GGTTTTACCTTCATTCTTGCCATCATTTTCGGGATGGAAAAACTAGACTG
GAAAAGCTCCAGTAGCCTAGCCAAATCAGTGGGAACCATACTGTTAATTA
CAGGGGCATTTATCATGACCTACTATAAGGGACCCCACCTTCTGATGACA
TCTTCGCCTCCCAACTTGTCCCTTCAATTTTTCATGCCGCACACAAACTG
GGTCATTGGTGGATTGCTCCTTGCCATTGATTGTGTGTTCACTTCAGCAT
GGCTCATTGTACAGGCCTCAATCCTTGAGAAATTCTCAGCTGAGCTGATC
GTCGTCTTTTTTTACTGCTTCTTTGTGGCCATTCAATCTGCAATACTC
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