CN189080

Overview
NameCN189080
Unique NameCN189080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7942 contig Csv1_Contig7942:480..1196. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189080 vs. ExPASy Swiss-Prot
Match: CRTZ_ESCVU (Beta-carotene hydroxylase OS=Escherichia vulneris GN=crtZ PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = -2
Query:  201 AAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 551
            + + ME  A + H+ + H   W  HESHH PR+G FELND+FA++ A  AIAL++ G    G+ P    G G+  TV+G+ Y  VHDGLVH+R+P   I    Y +R+  AH+LHH+
Sbjct:   11 SVIAMEGIAAFTHRYIMHGWGWRWHESHHTPRKGVFELNDLFAVVFAGVAIALIAVG--TAGVWPLQWIGCGM--TVYGLLYFLVHDGLVHQRWPFHWIPRRGYLKRLYVAHRLHHA 123          
BLAST of CN189080 vs. ExPASy Swiss-Prot
Match: CRTZ_PANAN (Beta-carotene hydroxylase OS=Pantoea ananas GN=crtZ PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  201 VGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 545
            +GME  A  AHK + H   W  H SHH PR+G FE+ND++A++ A  +I L+  G    G+ P    GAG+  T +G+ Y  VHDGLVH+R+P   I    Y +R+  AH++HH+
Sbjct:   15 IGMEVIAALAHKYIMHGWGWGWHLSHHEPRKGAFEVNDLYAVVFAALSILLIYLG--STGMWPLQWIGAGM--TAYGLLYFMVHDGLVHQRWPFRYIPRKGYLKRLYMAHRMHHA 125          
BLAST of CN189080 vs. ExPASy Swiss-Prot
Match: CRTZ_PARS1 (Beta-carotene hydroxylase OS=Paracoccus sp. (strain PC1) GN=crtZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = -2
Query:  174 FALSVGAAVGMEFWARWAHKALWHASL-WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 569
            F + V   + ME  A   H+ + H  L W  H+SHH   +   E ND++ ++ AV A  L + G +   ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    YFRR+  AH+LHH+   + H V +G
Sbjct:    4 FLIVVATVLVMELTAYSVHRWIMHGPLGWGWHKSHHEEHDHALEKNDLYGVVFAVLATILFTVGAYWWPVL----WWIALGMTVYGLIYFILHDGLVHQRWPFRYIPRRGYFRRLYQAHRLHHAVEGRDHCVSFG 134          
BLAST of CN189080 vs. ExPASy Swiss-Prot
Match: CRTZ_PARSN (Beta-carotene hydroxylase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtZ PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  174 FALSVGAAVGMEFWARWAHKALWHASL-WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 569
            F + V   + ME  A   H+ + H  L W  H+SHH   +   E ND++ ++ AV A  L + G+    ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    Y RR+  AH+LHH+   + H V +G
Sbjct:    4 FLIVVATVLVMELTAYSVHRWIMHGPLGWGWHKSHHEEHDHALEKNDLYGLVFAVIATVLFTVGWIWAPVL----WWIALGMTVYGLIYFVLHDGLVHQRWPFRYIPRKGYARRLYQAHRLHHAVEGRDHCVSFG 134          
The following BLAST results are available for this feature:
BLAST of CN189080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CRTZ_ESCVU9.264e-2144.44Beta-carotene hydroxylase OS=Escherichia vulneris ... [more]
CRTZ_PANAN1.338e-1942.61Beta-carotene hydroxylase OS=Pantoea ananas GN=crt... [more]
CRTZ_PARS14.028e-1635.56Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
CRTZ_PARSN1.999e-1534.81Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189080 ID=CN189080; Name=CN189080; organism=Citrus sinensis; type=EST; length=717bp
TTTTTCTTATAACACTATTGTTTCTGTACACTGACAAATTGATCCATAAA
TTGGTCCTCCCATTAAATTGATTATTTTGGAACCCTGTTGTATGATTTGA
TTCTCTTACTGATCTCCTTCTCCAATTCTTCTAGTCCCCCCACTTCTTCA
AGCTCCTTAGGTCCGAGAAAGAGCCCATATGGAACACCGTGGAATTTATC
CGAGTGGTGAAGCTGGTGAGCCGCAGCGACTCTCCGGAAATAAGGCACGT
CGGCAATGGGACCCACAGGGAACCTTTTGTGAACGAGACCATCGTGGACG
AACATGTAGGCCATCCCAAACACCGTAATGCCAAGTCCAGCACCAAAACA
GAGACCAGGTACAAGGCCTTTGTGGAAGAAGCCAAAAGAGAGAAGGGCTA
TGGCTGGAACTGCGTTGATTATGGCAAACACATCGTTTAGCTCAAAAGGA
CCCTCTCTTGGTCGATGGTGAGACTCGTGCATATGCCATAAAGAAGCATG
CCACAGAGCTTTATGAGCCCATCGTGCCCAAAACTCCATGCCCACAGCAG
CACCAACAGAGAGAGCAAATGTGCCAAACATTTCAGCTAAAGGCACCTCT
CCACCCTCCATTTGCCACCAGAACCTGTAATAAACAGCCATGACAGCCAT
GGAAGTGATACCAAAACTAGACATGACGGCAGCAACGAGATAAGTGAACC
TCTCGGATCTCTTTCTC
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