CN189079

Overview
NameCN189079
Unique NameCN189079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189079_ssr533 microsatellite CN189079_ssr533:533..544. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:745..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.265e-44
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  188 ARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 275
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDD WIFWVGPF+GA  AA YHQYILRAAAIKAL SFRSN
Sbjct:  186 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALASFRSN 275          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.271e-43
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIYNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  200 ARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.578e-43
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 275
            ARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK++ WDD WIFWVGPF+GA  AA YHQY+LRAAAIKALGSFRSN
Sbjct:  190 ARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.286e-43
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  202 ARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.515e-43
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  197 ARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.243e-42
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 272
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  195 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.623e-42
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 275
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN++KAWDD WIFW GPFIGA  AA YHQYILRAAAIKALGSFRSN
Sbjct:  190 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSN 279          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.120e-42
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N EKAW + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  200 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CN189079 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.374e-41
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 3
Query:    6 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 278
            ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  193 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 283          
The following BLAST results are available for this feature:
BLAST of CN189079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PIP27_ARATH2.265e-4492.31Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP28_ARATH3.270e-4392.22Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP21_MAIZE4.271e-4389.01Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP1_ATRCA5.578e-4388.89Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP22_MAIZE7.286e-4387.91Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP27_MAIZE9.515e-4387.91Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP24_ARATH1.243e-4293.26Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ1.623e-4291.11Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ2.120e-4289.01Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH1.374e-4186.81Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189079 ID=CN189079; Name=CN189079; organism=Citrus sinensis; type=EST; length=571bp
GAGGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCATTGGG
TTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAACCGG
CATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGGAGA
AAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCT
TTCGTTGCTGCATTCTACCACCAATACATTCTCAGGGCAGCAGCCATTAA
GGCTCTTGGATCCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTCTG
GTGCTTCCAAGGTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTGTT
ACGAAGGCCCTTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGCCATTGA
ATTTGAGCTGAATTAGAGGGCTATTGAATTGTAGATATTTGAACATTATG
CATTTTATGCCTATGCTTTATCTATGTGTAAGGGTGGATTTTGGTATCCC
ATTTTAATTTTTTTCTTTGGGTGTGTTTATAAGTGGTGGTGGTGTTTTTT
ATATATCCTATTTCTCTAAAA
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