CN189061

Overview
NameCN189061
Unique NameCN189061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189061_ssr153 microsatellite CN189061_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.669e-19
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  343 EQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            E  GQS W DNL R + +   L  +I   G+RG+TSNPAIF+KAI+ +  Y+      +++ K +   Y  LV KDI+DAC +F  +Y+ET G DGY+S+EV P +A
Sbjct:   10 ENLGQSIWMDNLSRNIIESGELKSMIGKKGIRGITSNPAIFEKAIAGNAIYDADIEAGIKASKSVIEIYESLVFKDIRDACDIFMPVYEETKGLDGYISIEVPPTIA 116          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQS W DNL R +     L  +IA  GV GVTSNP+IFQ A+++S  Y D    L +   D+E  Y  LVI DI+DAC L   +++ + G DGYVS+EV+PRLA
Sbjct:   11 GQSLWLDNLSRDLLRDGALAKMIAEDGVSGVTSNPSIFQNALATSPHYADDLARLRREEADVERRYEALVIPDIRDACDLLLPLFERSAGNDGYVSLEVAPRLA 114          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  352 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G + W D++ R      +L  L+A+  V GVTSNP IFQKAI+SS+ YN+Q R+L   G D+  A   +   D+++AC +   +YD + G DG VS+EV PRLA
Sbjct:   12 GVAVWLDDISRDRLRTGNLADLVANRSVVGVTSNPTIFQKAIASSDLYNEQLRDLKVRGVDVGEAVRAITAADVREACDVLRGVYDASGGVDGRVSLEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  352 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G + W D++ R      +L  L+ + GV GVTSNP IFQKAISSS+ Y++Q  +L   G D+  A   +   D++DAC +   +YD + G DG VS+EV PRLA
Sbjct:   12 GVAVWLDDISRDRLRTGNLAHLVENRGVVGVTSNPTIFQKAISSSDLYDEQLHDLAIRGVDVGEAVRAITAADVRDACDVLRGVYDASGGVDGRVSLEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL2_NOSP7 (Transaldolase 2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tal2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.307e-15
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  343 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            +Q GQS W DNL R +    +L  ++ + G+ G+TSNPAIF+KAI+ +  Y+      V++G  I   Y  LV  DI++AC +   +Y+ +N  DGYVS+EV P +A
Sbjct:   10 KQYGQSIWMDNLTRDIIQSGELKDMVENQGISGITSNPAIFEKAIAGNAIYDADIEAGVRAGLPIYKIYESLVFADIRNACDILRPVYEASNRLDGYVSIEVPPTIA 116          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_THISH (Transaldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=tal PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQS--GKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            GQS WYD + R + D   L  LI   G+ G+TSNPAIF KAI+ ++ Y    R+ +++  G + EA ++ L I+D+Q A  +F  +Y ET G DG+VS+EVSP LA
Sbjct:   14 GQSIWYDYIRRDLLDSGELARLIREDGLGGLTSNPAIFDKAIAGTDLYRTAIRDALRADPGLNDEALFFRLAIEDLQRAADVFLPLYRETGGADGFVSLEVSPDLA 119          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL2_ANASP (Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) GN=tal2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  343 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            ++ GQS W DNL R +    +L  L+ + G+ G+TSNPAIF+KAI+++  Y+      V++G      Y  L+  DI++AC +   +Y+ +N  DGYVS+EV P +A
Sbjct:   10 KEYGQSIWMDNLSRDIIQSGELKNLVENQGICGITSNPAIFEKAIANNVIYDADIEAGVRAGLPTYKIYESLIFADIRNACDILRPVYEASNKLDGYVSIEVPPTIA 116          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G + W D++ R      +L  L  +  V GVTSNP IFQKAI     YN+Q R+L   G D+  A   +   DI+DAC +    YD + G DG VS+EV PRLA
Sbjct:   12 GVAVWLDDISRERIRTGNLAELARTRSVVGVTSNPTIFQKAIGGGETYNEQLRDLAVRGVDVGEAVRAITAADIRDACDILRPAYDASAGVDGRVSLEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL2_STRCO (Transaldolase 2 OS=Streptomyces coelicolor GN=tal2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  349 EGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L   G  +E A   +   D++DA  +   +YD T G DG VS+EV PRLA
Sbjct:   11 EGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQLADLAVRGVTVEEAIRMITTADVRDAADILRPVYDNTGGKDGRVSIEVDPRLA 115          
BLAST of CN189061 vs. ExPASy Swiss-Prot
Match: TAL_SACEN (Transaldolase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tal PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  352 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLA 651
            G S W D+L R   +   L  LI+   V GVTSNP IF KA+S++  Y++Q REL   G  ++ A  EL  +DI++A  +F +IY+   G DG VS+EV PRLA
Sbjct:   14 GVSIWLDDLSRKRINSGNLAELISDYAVVGVTSNPTIFAKALSNAADYDEQVRELAARGASVDDAVRELTTRDIREAADIFRNIYEA--GHDGRVSLEVDPRLA 115          
The following BLAST results are available for this feature:
BLAST of CN189061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_TRIEI5.669e-1944.86Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_THIDA6.268e-1849.04Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL_FRAAA3.439e-1644.23Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL_FRASC5.867e-1644.23Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL2_NOSP71.307e-1541.12Transaldolase 2 OS=Nostoc punctiforme (strain ATCC... [more]
TAL_THISH2.229e-1545.28Transaldolase OS=Thioalkalivibrio sp. (strain HL-E... [more]
TAL2_ANASP1.887e-1439.25Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) ... [more]
TAL_FRASN3.219e-1443.27Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL2_STRCO3.219e-1443.81Transaldolase 2 OS=Streptomyces coelicolor GN=tal2... [more]
TAL_SACEN1.598e-1345.19Transaldolase OS=Saccharopolyspora erythraea (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189061 ID=CN189061; Name=CN189061; organism=Citrus sinensis; type=EST; length=653bp
GACGGTTTCTTCGTTTGTATCGTACTTGGTTGAAGCTTACAATCGTCGCT
CTTTATTTCTGAGTTTTTAGATTCAAGGATCCACGAGTCTTTAATGGCGA
CCATTTCGAAGCTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCC
AGATCATCATCATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAA
AACTGGGTTCAATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATA
ACCACCCTTTGAAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGA
AATGGAAGTAGTGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGA
AGGGCAGAGCCCTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGC
TTCCGCTCATTGCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATT
TTCCAGAAAGCAATATCTTCATCGAATGCTTACAATGATCAATTTAGGGA
ACTTGTACAATCTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGA
TTAAGGACATTCAAGATGCATGCAAACTTTTTGAGTCAATCTATGATGAA
ACCAATGGCGGTGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGC
TGA
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