CN189058

Overview
NameCN189058
Unique NameCN189058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:378..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  IAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   67 KKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  IAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   67 KKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CN189058 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -2
Query:  388 KRFGIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 537
            K+  I   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   67 KKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
The following BLAST results are available for this feature:
BLAST of CN189058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IF1A_ONOVI9.253e-1888.00Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT5.998e-1784.00Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AY_PANTR8.962e-1372.00Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN8.962e-1372.00Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AX_PONAB8.962e-1372.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE8.962e-1372.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN8.962e-1372.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1A_RAT1.170e-1270.00Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE1.170e-1270.00Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT2.608e-1270.00Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189058 ID=CN189058; Name=CN189058; organism=Citrus sinensis; type=EST; length=538bp
TTTTTTTTTTTTTTTGTCTTCCAATTGCCACAACAAATTATTATTGACAT
TAAAGAATTGAACCATACCAGTATAAGATTCCATTCTAGAAATACCACTT
CAAAAAAAGTGCAGAACTAAACAAAATTAATAAGCAAGTAATAGGCGTTA
CACGAAATATGACAGGCTCACCATTAAAAATTCCAAATATATAAGCTGCA
AACACATATTTTCAGCTTTTAAGTAACCAATACATTGGCATACTCCATTT
TTGCTAAATATTGAACATAAACCCCAGACAGAGTCGATTCTCGGAGCCTA
GATCTTATCAATATCTTCGTCTTCAAACTCGATGTAATCATTATCAGCGC
CATCATCCTCTTCATCAAGACCACCAGCAATGCCCTCATTGAGACGGGTA
CTCTCTGGAAGTTCACCATAAGCCTTCAGAAGCCTTGCCTCGTCGGGCAT
ATACTTGAGGATGACATCAGCCTTGTCATCCTGATAATCACGTAGGCCAA
CAAGTATTATATCACCAGCTGCAATCCCAAACCTTTTT
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