CN189056

Overview
NameCN189056
Unique NameCN189056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189056 vs. ExPASy Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 84/115 (73.04%), Postives = 103/115 (89.57%), Query Frame = 2 
Query:   80 SITSSTPVWPTIDGPLGLTEDDSLSYARKFYQFGFALLPFLWAVNCFYFWPVLRHSASFPRIRHYVLGSAVGFAVFTVVLLSWALTFAIGGEHLFGSVWDKLVMYNVAERLGLTG 424
            +I SS  VWPTIDGPLGLTE+ S+ YAR+FY+FGFALLP+LW VNCFYFWPVLRHS +FP+IR+YV+ SA+GF+VFT +L +WALTF+IGGE LFG ++DKLVMYNVA+RLGL+G
Sbjct:   30 TIISSAQVWPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144
The following BLAST results are available for this feature:
BLAST of CN189056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PEN2_ARATH7.890e-4773.04Probable gamma-secretase subunit PEN-2 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189056 ID=CN189056; Name=CN189056; organism=Citrus sinensis; type=EST; length=734bp
AGGCTTTTGTGGTCAAATGGACGGGTCACAGAGCAACGACCGGAATCCGA
ATCCGAACCCGAGGGGCAACAATGGGAACTCGATAACATCGTCCACGCCG
GTGTGGCCAACGATCGACGGGCCGTTGGGTTTAACGGAAGACGATTCATT
GAGCTACGCTCGCAAATTCTATCAGTTCGGTTTCGCACTGCTGCCGTTTC
TTTGGGCTGTCAATTGCTTCTACTTCTGGCCTGTTCTTCGCCACTCCGCC
TCTTTCCCTCGTATTCGCCACTATGTTCTTGGATCAGCAGTTGGATTTGC
AGTCTTCACAGTTGTTTTACTCTCATGGGCATTGACATTTGCCATTGGAG
GGGAGCATCTCTTTGGCTCTGTTTGGGATAAACTAGTAATGTACAATGTT
GCTGAGAGGTTAGGCTTGACAGGTTGGAGCTAGTCATAAACTGTTTCCAA
GCTCATGAGTCTTAAAACTCATTTCCCTTGTCATTGTATAGTCTGTTGTT
GAAACTTGAAACAACATACATTCATGTTGAAGGTAATGTTGGAGCCATTT
TTCTCAATTAGTAAAAGAACCTTTCCTGTTGAATCTAGTGGCAGATTCAT
GCTTTTATCTGAAAAATAATGTATCGTGGCATGTATCTTTTTTTTTGGTA
TTAAAAAAAAAAAACATGAGAACTCCACCTCGTGCCGTTCTTGTTGTAAA
GGCGAGACTTCAAGCTAAACAAGTTACAACTGGA
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