CN189051

Overview
NameCN189051
Unique NameCN189051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3531 contig Csv1_Contig3531:60..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189051 vs. ExPASy Swiss-Prot
Match: RGAP1_ARATH (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 89/130 (68.46%), Postives = 106/130 (81.54%), Query Frame = -1
Query:  339 LSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYQQYWNHASRS--SSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 722
            LSNVN+ TLE++TALLLRVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE Y++YW   SRS   S + E ATP   WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct:  250 LSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP---WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376          
The following BLAST results are available for this feature:
BLAST of CN189051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RGAP1_ARATH3.552e-4468.46Uncharacterized Rho GTPase-activating protein At5g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189051 ID=CN189051; Name=CN189051; organism=Citrus sinensis; type=EST; length=722bp
CTTTTTACATCGAAATCCCCAATTTTCTAGAAAGCAAACCGAGTGAAAAT
TACAATACTTATTTGCACCAAGCAACAGTTTCTGTCCCAAAAACAACAAA
TATTTGACAACCAAAAATATCTAAACTATAAATAATTTTGAATAAGATAC
TCTCTAATCACTAAAATTTACAAATCAATACCCCAGAACCCTCCAACGTC
TTTCAAGAACACAATATCGGCAGCTACTGCACAGGCGGCACCTCAACTAA
ATTTAGAAACCAATCGTGAGATATTGGTTACTATGTCAAGCTTCATGAAT
TCGCCGTAGCATCGGAAATCACACAGAATGGTAAGTCACCTCCATACAGT
CTCATTTGCATCTGTGAAAATCGCGTTGTGCTGTTCCATTAGGCATTGAA
CAACCTCGATAGCACCAAAGTCAATTGGCATACCATCATCCAAAGGAATG
GCAGACGAGGCATCCATTTCTTCACTCTCATCAGCAAGCATGTCCCATTC
ACCATGAGGAGTTGCTGGTTCCATGTTCTTCGAAGAGCTTCTGGATGCAT
GATTCCAATATTGCTGATAAAACTCTGGTTTTCGCTCCTTCTGCCACATA
ATAACAGGGGCCATTTCCATGGCAAGACTTCTAGCATCCATCTTGTTAAG
AAGTGACTTCTGGCTAACACGGAGCAAAAGTGCAGTAACATATTCCAGTG
TCATGAAGTTCACATTGGAAAG
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