CN189048

Overview
NameCN189048
Unique NameCN189048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10240 contig Csv1_Contig10240:1249..1772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189048 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.867e-30
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 3 
Query:    6 VYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA 260
            +Y +SLIAA+C+HAYQQVSYMIL RVSPVTHSVGNC           +FF+TPVS +NAFGTGIALAGVFLYSRVKRIKPK KTA
Sbjct:  318 IYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSRVKRIKPKPKTA 402
[Close]
BLAST of CN189048 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 3 
Query:   30 AICYHAYQQVSYMILQRVSPVTHSVGNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSRVK 233
            ++ YH Y QVSYM L ++SP+T SVGN            + FRTPV  +NA G  IA+ G FLYS+ K
Sbjct:  320 SVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFLYSQAK 387
The following BLAST results are available for this feature:
BLAST of CN189048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TPT2_BRAOB4.867e-3074.12Triose phosphate/phosphate translocator, non-green... [more]
GPT1_ARATH2.271e-1147.06Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189048 ID=CN189048; Name=CN189048; organism=Citrus sinensis; type=EST; length=546bp
GCAGTGTTTATGTAAGGTCACTTATCGCTGCAATCTGTTACCATGCTTAT
CAGCAGGTCTCTTACATGATATTACAGAGGGTAAGCCCTGTTACCCATTC
AGTAGGCAATTGTGTGAAGAGGGTGGTGGTCATCGTGAGCTCTGTTATGT
TCTTCCGAACTCCAGTCTCAGCTATCAATGCCTTTGGCACTGGGATCGCT
CTTGCTGGAGTTTTCCTGTACTCAAGGGTGAAGCGCATTAAGCCAAAGGC
AAAGACTGCTTAAATTTCTTGTGGAGAATTTTTTTTCCAGGCAATTGGGT
TGTTAGTTGATAAAATTTAAGTTGTTCATTGAGAACTTATTTTTAGGTCA
GGGCAGGAACTTAATTTTTATTTTGGGTTTGTAATCTCTTTTCTTTTTTG
TTTCTCTCTTTATCTTTCTTTTGAGATGATACATTCTTTTGTGGATTTCG
CCACAGTTATGCCGGTAGCAAATCAGCTGCTCTGAATTGTATCTTGTCCT
TTTTGTTTAAGCCCCAATGTTTCATCTCCCAAAAAAAAAAAAAAAA
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