CN189046

Overview
NameCN189046
Unique NameCN189046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3595 contig Csv1_Contig3595:159..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 455.677 bits (1171), Expect = 1.281e-127
Identity = 224/253 (88.54%), Postives = 242/253 (95.65%), Query Frame = 1
Query:    4 EALKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKY 762
            +ALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +N  A+PGIDL+VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYETKTKHRKLTWIYSLG C+INGKF+QK IELIVSTYQAA LLLFNT+D+LSY+EI+ QLNL+H+DLVRLLHSLSCAKY
Sbjct:  365 KALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKY 617          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.954e-51
Identity = 106/251 (42.23%), Postives = 160/251 (63.75%), Query Frame = 1
Query:    7 ALKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            A+KEAFE F NK    +  +EL+A + D+ L+  GN++ +DE +E+ L+K++ +  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++Y+ N QN    I+L+V +LT G+WP+Y   +++LP EMVK  E+FK FY  K   RKL W  +LG C +  +F++   EL VS +Q   LL+FN  +  S  EI     +   +L R L SL+C K
Sbjct:  525 AMKEAFETFINKRP--NKPAELIAKYVDSKLR-AGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQN-QNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGK 771          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.072e-49
Identity = 103/250 (41.20%), Postives = 157/250 (62.80%), Query Frame = 1
Query:   10 LKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            +KE+FE F NK    +  +EL+A   D+ L+  GN++ +DE +E TL+K++ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P IDL+V +LT G+WP+Y   +++L  EM+K  EVFK FY  K   RKL W  +LG   +  +F++   E  VS +Q   LL+FN  D  S+ EI     +   +L R L SL+C K
Sbjct:  390 MKESFETFINKRP--NKPAELIAKHVDSKLR-AGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 635          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.951e-49
Identity = 104/250 (41.60%), Postives = 156/250 (62.40%), Query Frame = 1
Query:   10 LKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            +KE+FE F NK    +  +EL+A   D+ L+  GN++ +DE +E  L+K++ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N Q+A   IDL+V +LT G+WP+Y   +++LP EMV+  EVFK FY  K   RKL W  +LG   +   F++   E  VS +Q   LL+FN  D  S+ EI     +   +L R L SL+C K
Sbjct:  390 MKESFETFINKRP--NKPAELIAKHVDSKLR-AGNKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSAPGPIDLTVNILTMGYWPTYTPMEVHLPPEMVRLQEVFKTFYLGKHSGRKLQWQTTLGHAVLKADFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 635          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.186e-48
Identity = 104/251 (41.43%), Postives = 158/251 (62.95%), Query Frame = 1
Query:    7 ALKEAFEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            ++++AFE F N       S E ++ F D  LKKG  + +S+E ++  L+K++ L   I +KD+F ++Y++ LA+RLL  RS +DD ER+++ KLK +CG QFTSK+EGM TD+ L+++  + F+ Y+ N + A P IDL+V VLTTGFWP+  +++ NLP E++ C E FK +Y +    R L W  ++G   I   F  K+ EL VS+YQ   LLLFN   +L++ EI  Q  +   DL R L +L+  K
Sbjct:  364 SIQQAFEYFINL---NPKSPEYISLFIDEKLKKG-LKGVSEEEVDIILDKILMLFRLIQEKDVFEKYYKQHLAKRLLLGRSISDDAERNMIAKLKTECGYQFTSKLEGMFTDMRLSQDTMSGFKTYIQNLKKALP-IDLNVHVLTTGFWPTQNTANCNLPREILLCCEAFKSYYLSNHNGRLLLWQTNMGTAEIKANFPSKSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLLALTNPK 609          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 90/236 (38.14%), Postives = 142/236 (60.17%), Query Frame = 1
Query:   55 SSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSY-KSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            + S ELLA +CD +LKKG N++  +  +EE L +++ L  Y+ DKD+F +FY K L+RRL+   S +DD E+ ++T LKQ CG ++TSK + M  D+TL+ E    F+ +L  N  +   ID S+ VLT+G W  + ++S   +P E+  C+  F+ +Y T+ + RKL W++ L +      F +K+ +  V+ +Q   LL+FNT + +S  EI    NL  ++L R L SL  AK
Sbjct:  379 TKSPELLAKYCDMLLKKG-NKQHEEIELEEKLGQIIVLFKYVDDKDVFQKFYSKMLSRRLINGTSVSDDIEKFMITGLKQACGFEYTSKFQRMFNDITLSAETNEEFKNHLIKNSLSIGKIDFSILVLTSGSWSLHSQTSSFIVPQELTLCISAFQQYYSTQHQGRKLNWLHHLCKAEAKSFFAKKSYDFQVTNFQLGILLIFNTQESVSLEEITKFTNLNENELSRTLQSLIEAK 613          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.027e-40
Identity = 95/270 (35.19%), Postives = 154/270 (57.04%), Query Frame = 1
Query:   22 FEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKF-----------------------EQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            FE F N     S S E L+ F D+ LKKG  + L+++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P       E+F+ FY  K   R+LT  + +G  ++N  F                        +K+I L VST+Q   L+LFN  D+ ++ EI  + ++   +LVR L SL+C K
Sbjct:  374 FEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHI-LQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGK 638          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.516e-40
Identity = 94/270 (34.81%), Postives = 154/270 (57.04%), Query Frame = 1
Query:   22 FEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKF-----------------------EQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            FE F N     S S E L+ F D+ LKKG  + L+++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P       E+F+ FY  K   R+LT  + +G  ++N  F                        +K+I L VST+Q   L+LFN  ++ ++ EI  + ++   +LVR L SL+C K
Sbjct:  374 FEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPSPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGAVKKEDGSEVGVGGAQVTGSNTRKHI-LQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGK 638          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.898e-40
Identity = 94/270 (34.81%), Postives = 154/270 (57.04%), Query Frame = 1
Query:   22 FEIFCNKPVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKF-----------------------EQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            FE F N     S S E L+ F D+ LKKG  + L+++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P       E+F+ FY  K   R+LT  + +G  ++N  F                        +K+I L VST+Q   L+LFN  ++ ++ EI  + ++   +LVR L SL+C K
Sbjct:  374 FEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHI-LQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGK 638          
BLAST of CN189046 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39
Identity = 90/256 (35.16%), Postives = 148/256 (57.81%), Query Frame = 1
Query:    7 ALKEAFEIFCNKPVGGS--SSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNT---SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 759
            A+++AFE F N   G    + + L+A + D +L+ G  +    + ++E   +++ L  YI+ KD+F  +Y+  +A+RLL ++SA+  +E  +L  LK+ CG QFT  +EGM  D+ +++E  +SF    + + N H   DL V VL+  +WPSY  S + LP +M + ++ F+ FY +K   +K++W  SLG C +  +F   N EL +S +QA  LL FN     + +SY ++     L+  DL R L SLSCA+
Sbjct:  359 AMRKAFETFINGAKGSQREAPARLIAKYIDYLLRVG-EQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFRHSKAAH-NLHR--DLYVNVLSQAYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCAR 610          
The following BLAST results are available for this feature:
BLAST of CN189046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CUL1_ARATH1.281e-12788.54Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4B_HUMAN1.954e-5142.23Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN1.072e-4941.20Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE6.951e-4941.60Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL3_DICDI1.186e-4841.43Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL2_DICDI6.302e-4238.14Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]
CUL3A_XENLA2.027e-4035.19Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3B_XENLA4.516e-4034.81Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_XENTR5.898e-4034.81Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL4_SCHPO1.314e-3935.16Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189046 ID=CN189046; Name=CN189046; organism=Citrus sinensis; type=EST; length=762bp
GCGGAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAACCTGTTGG
TGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAATATCCTAA
AGAAGGGTGGAAATGAGAAACTGAGTGATGAAGCCATTGAAGAAACTCTG
GAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGATCTTTTTGC
CGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGATCGTAGTG
CTAATGATGATCATGAAAGGAGTATTCTCACAAAGCTGAAGCAGCAGTGT
GGTGGACAGTTTACATCGAAGATGGAGGGAATGGTTACAGATTTGACTTT
GGCAAGAGAAAATCAGACCAGCTTTGAGGAATATCTCAGCAATAACCAGA
ATGCACACCCTGGAATAGATTTATCAGTTACTGTTCTCACTACTGGATTT
TGGCCAAGTTATAAATCCTCCGATCTGAACCTTCCTTCTGAGATGGTTAA
ATGTGTAGAAGTTTTTAAGGGATTTTATGAAACCAAAACAAAACACAGAA
AACTTACATGGATTTACTCATTGGGTCAATGCAACATAAATGGCAAGTTT
GAGCAAAAAAATATTGAGCTGATTGTATCAACATATCAGGCTGCAACTCT
ACTGCTTTTTAATACTTCGGATAGATTGAGCTATTCAGAGATCATGACTC
AGCTGAACTTGACTCATGATGACCTGGTTAGATTGCTCCATTCCCTGTCA
TGTGCCAAGTAT
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