CN189044

Overview
NameCN189044
Unique NameCN189044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189044_ssr365 microsatellite CN189044_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_CHAGB (Translation machinery-associated protein 22 OS=Chaetomium globosum GN=TMA22 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.330e-29
Identity = 74/198 (37.37%), Postives = 105/198 (53.03%), Query Frame = 2
Query:   71 MAEKPQPV--RVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKKVAAA 658
            MAE P PV   ++YC +C+LP EYCE+G   +KC+ WL K  P+LY  +                         A  A   + +  K  +          K  +  V I+++ RNKRK +T V GL+ FG++L   +K  GKKFATGASV K P+  E+I VQGD+S +I EF+ + +  +PE  I  +ED KK A+A
Sbjct:    1 MAE-PTPVGREIIYCGVCTLPPEYCEYGGTTKKCQEWLEKKHPDLYARIWSPEALEAATASLSLAAQERAAKDAAKKAAKAEAAEQKHAD----------KLAKSVVTIKRIERNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPSGGEEIVVQGDVSGEIEEFLLEKYKDIPEDNIELVEDKKKKASA 187          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_NEUCR (Translation machinery-associated protein 22 OS=Neurospora crassa GN=tma-22 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   98 VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKK 646
            V+YC +CSLP EYCE+G   +KC+ WL KN P +Y  +                            A   + +  KQ +          K+    V I+++ RNKRK +T V GL+ FG++L   +K  GKKFATG+SV K P+  E+I VQGD+S +I EFI + +  VPE  I  +ED KK
Sbjct:    9 VVYCGVCSLPPEYCEYGGTVKKCQQWLEKNQPTMYSRIWSPEVLEAEMASLSVEAQERAMKDAKKKAAKAEAAEQKQAD----------KRANSVVTIKRIERNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGDVSGEIEEFILEKYKEVPEDNIELVEDKKK 181          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_SCHPO (Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe GN=tma22 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 73/194 (37.63%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   83 PQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQE-------VVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGK 643
            P+   VLYC +C+LP EYCEF    +KCK WL  + P++Y  L                              SG   S+ +E+  +L   + K+ ER+E       V+I+ + R KRK +T V+GLD FG++   A+K L  KFATGASV K   +K++I VQGD++YDI +FI + +  VPE  I  +ED K
Sbjct:    7 PKLKSVLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLN--------------VSGTKDSNAEEQPAKLTKEE-KRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFILEKFKEVPEDNIKIVEDTK 185          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_COCIM (Translation machinery-associated protein 22 OS=Coccidioides immitis GN=TMA22 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.021e-26
Identity = 65/194 (33.51%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   80 KPQPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT-WPAVPETAIYFIEDGKKVAAA 658
            +PQ   ++YC +CSLP EYCEFG   +KC+ WL +N P ++  L                              + + ++ K+ +   +     ++K   +V I++V RNKRK +T++ GL+  G+     +K+LGKKFATG+SV K P   E+I VQGD+  D++E++ +     VPE  +  +ED KK  AA
Sbjct:   15 EPQARHIVYCGVCSLPPEYCEFGGTAKKCEEWLHENNPSMHQKLYSEETIAANLSTLSIQAR----------ERAAKDAAKKEAKAALVETRNQERKAAAKVQIKRVERNKRKHVTVIAGLEAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGDVCEDVLEWLVEVHGKEVPEDNLEIVEDKKKKKAA 198          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_ASPFU (Translation machinery-associated protein 22 OS=Aspergillus fumigatus GN=tma22 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.021e-26
Identity = 65/188 (34.57%), Postives = 103/188 (54.79%), Query Frame = 2
Query:   86 QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKK 646
            Q  +V+YC +C+LP EYCEFG   +KC+ WL  N  ELY  L                         +    + + ++ K+ +         ++K   +V I++V RNKRK +T++ GL++ G++    +K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +   +PE+ I  +ED KK
Sbjct:   13 QAKKVVYCGVCTLPPEYCEFGGTAKKCEEWLKDNHAELYQRLYS----------EEALSSNLSELSVSVRERAAKDAAKKEAKAAAAEARDAERKAAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVKEWLLELYGKEIPESNIELVEDKKK 190          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_XENLA (Density-regulated protein OS=Xenopus laevis GN=denr PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEE---VKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKK 646
            P++VLYC +CSLP EYCE+ PD  KC+ WL KN P+++  L                           G   GQ +S ++EE    KR   G+IK+K++   Q + I K+ R K+K +T V GL  F ++L DA +   +KF+ GASV    T +++I +QGD + DI++ I + WP V + +I  + + KK
Sbjct:   28 PLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDVFAKL-----------------TLGHIPKQETGTVEGQATSGEEEEKKKQKRGGRGQIKQKKKTVPQRITIAKIPRAKKKYVTRVCGLATFEIELKDAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 198          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_NEOFI (Translation machinery-associated protein 22 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tma22 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   86 QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKKVAA 655
            Q  +V+YC +C+LP EYCEFG   +KC+ WL  N  +LY  L                         +    + + ++ K+ +         ++K   +V I++V RNKRK +T++ GL++ G++    +K+LGKKFATG+SV K P   E+I VQGD+S D+ E++ + +   +PE+ I  +ED KK A+
Sbjct:   13 QAKQVVYCGVCTLPPEYCEFGGTAKKCEEWLKDNHADLYQRLYS----------EEALSSNLSELSVSVRERAAKDAAKKEAKAAAAEARDAERKAAAKVQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDVSEDVQEWLLELYGKEIPESNIELVEDKKKKAS 193          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_XENTR (Density-regulated protein OS=Xenopus tropicalis GN=denr PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   89 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEE---VKRLPGGKIKKKER---QEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVPETAIYFIEDGKK 646
            P++VLYC +CSLP EYCE+ PD  KC+ WL KN P+ +  L                           G   GQ +S ++EE    KR   G+IK+K++   Q+V I K+ R K+K +T V GL  F ++L DA +   +KF+ GASV    T +++I +QGD + DI++ I + WP V + +I  + + KK
Sbjct:   30 PLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDEFSKL-----------------TLGISPKQETGTVEGQATSGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGLATFEIELKDAQRFFAQKFSCGASV----TGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 200          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_ASPNC (Translation machinery-associated protein 22 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tma22 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 68/203 (33.50%), Postives = 105/203 (51.72%), Query Frame = 2
Query:   71 MAEKPQPV-------RVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKKVAA 655
            MAE  QPV        V+YC +C+LP EYCEFG   +KC+ WL    P++Y  L                              + + ++ K+ +         ++K   +V I++V RNKRK +T++ GLD++G++    +K LGKKFATG+S+ +     E+I VQGD+S D+ E++ + +   +PE  I  IED KK  A
Sbjct:    1 MAEVAQPVPAESQAKHVVYCGVCTLPPEYCEFGGTAKKCEEWLKDAHPDMYQSLYSEEALNSNLATLSVSARER----------AAKDAAKKEAKAAAAEARDAERKAASKVQIKRVERNKRKHVTVITGLDIYGLENKKIAKDLGKKFATGSSMTRSAGGTEEITVQGDVSDDVKEWLLEVYGKEIPEANIELIEDKKKKKA 193          
BLAST of CN189044 vs. ExPASy Swiss-Prot
Match: DENR_ASPOR (Translation machinery-associated protein 22 OS=Aspergillus oryzae GN=tma22 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 63/188 (33.51%), Postives = 101/188 (53.72%), Query Frame = 2
Query:   86 QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLXXXXXXXXXXVXXXXXXXXXXXXXADGATSGQTSSSKQEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW-PAVPETAIYFIEDGKK 646
            Q   V+YC +C+LP EYCEFG   +KC+ WL +  PELY  L                              + + ++ K+ +         ++K   +V I++V RNKRK +T++ GL+++G++    +K+LGKKFATG+SV +     E+I VQGD+S D+ +++ + +   +PE  I  IED KK
Sbjct:   13 QARHVVYCGVCTLPPEYCEFGGTAKKCEEWLKEKQPELYQRLHSEEAISANLSTLSISAQER----------AAKDAAKKEAKAALAEARDAERKAASKVQIKRVERNKRKHVTVIAGLEVYGLENKKVAKELGKKFATGSSVTRSAAGNEEITVQGDVSDDVQDWLLEVYGKEIPEANIEIIEDKKK 190          
The following BLAST results are available for this feature:
BLAST of CN189044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DENR_CHAGB3.330e-2937.37Translation machinery-associated protein 22 OS=Cha... [more]
DENR_NEUCR7.420e-2937.70Translation machinery-associated protein 22 OS=Neu... [more]
DENR_SCHPO8.203e-2837.63Translation machinery-associated protein 22 OS=Sch... [more]
DENR_COCIM2.021e-2633.51Translation machinery-associated protein 22 OS=Coc... [more]
DENR_ASPFU2.021e-2634.57Translation machinery-associated protein 22 OS=Asp... [more]
DENR_XENLA2.639e-2635.94Density-regulated protein OS=Xenopus laevis GN=den... [more]
DENR_NEOFI2.639e-2634.03Translation machinery-associated protein 22 OS=Neo... [more]
DENR_XENTR4.501e-2636.46Density-regulated protein OS=Xenopus tropicalis GN... [more]
DENR_ASPNC4.501e-2633.50Translation machinery-associated protein 22 OS=Asp... [more]
DENR_ASPOR1.003e-2533.51Translation machinery-associated protein 22 OS=Asp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189044 ID=CN189044; Name=CN189044; organism=Citrus sinensis; type=EST; length=733bp
GCGGTAGAGAACAAAAGAGAAGAGCAAATTGATCGGACAGAACCTGAATA
CAATAATATAATTTTACTGGATGGCAGAGAAACCTCAACCAGTGCGTGTT
CTGTATTGTTCAATATGTTCTCTTCCTGCGGAGTACTGTGAATTCGGTCC
TGACTTTGAGAAATGCAAACCTTGGTTGATCAAAAACGCTCCTGAATTAT
ACCCAGATCTCCTTAAAGAAGCAAATGAAAAGGAGGCTGAGAAGGTCTCT
GGGCAGCTTCAATTATTTGGTCTCTCTTCAGGCGGTGCTGATGGAGCTAC
TTCTGGGCAAACATCATCGTCTAAGCAAGAAGAAGTTAAACGTCTTCCTG
GTGGAAAAATAAAGAAGAAAGAAAGACAAGAAGTTGTTATTGAAAAAGTT
GTACGCAACAAGCGCAAATGTATAACCATTGTGAAGGGCCTGGACCTGTT
TGGTGTTAAACTTAGTGATGCTTCTAAAAAGCTTGGGAAAAAGTTTGCCA
CTGGAGCATCTGTTGTTAAGGGCCCAACTGAGAAAGAGCAAATTGATGTT
CAAGGGGACATATCCTATGACATTGTGGAATTCATTACAGACACCTGGCC
TGCTGTGCCCGAAACTGCTATATATTTCATTGAAGACGGGAAAAAGGTTG
CAGCCGCATAATGTTAGGAGCTTTTTCAAAAGGGTGGTAGTTTCAATTTG
ACAAAAAGGAGCCTATAAACTGCTCATTTTTTT
back to top