CN189041

Overview
NameCN189041
Unique NameCN189041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1465 contig Csv1_Contig1465:402..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.181e-85
Identity = 150/158 (94.94%), Postives = 157/158 (99.37%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRLLYDTKGRFRLHSIRDEE+KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKIT+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+I+EEA+KR
Sbjct:   94 NFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.294e-83
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:   98 NFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 308.145 bits (788), Expect = 2.996e-83
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:   98 NFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.996e-83
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:   98 NFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.111e-83
Identity = 145/158 (91.77%), Postives = 156/158 (98.73%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+IIE+ARKR
Sbjct:   98 NFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.644e-81
Identity = 142/158 (89.87%), Postives = 153/158 (96.84%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            N+RLLYDTKGRFRLH IRDE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR
Sbjct:   98 NYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 300.827 bits (769), Expect = 4.784e-81
Identity = 141/158 (89.24%), Postives = 153/158 (96.84%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            N+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR
Sbjct:   98 NYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.289e-80
Identity = 143/158 (90.51%), Postives = 151/158 (95.57%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            +FRLLYDTKGRF LH+I  +E KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK KGIKLSIIEEARKR
Sbjct:   98 DFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:   98 NFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN189041 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 107/158 (67.72%), Postives = 131/158 (82.91%), Query Frame = -2 
Query:  251 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 724
            NFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:   98 NFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CN189041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_PRUAR4.181e-8594.9440S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS43_ARATH2.294e-8393.0440S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH2.996e-8393.0440S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH2.996e-8393.0440S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU5.111e-8391.7740S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_MAIZE1.644e-8189.8740S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4_ORYSJ4.784e-8189.2440S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_GOSHI5.289e-8090.5140S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_CRIGR8.483e-6267.7240S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_BOVIN1.108e-6167.7240S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189041 ID=CN189041; Name=CN189041; organism=Citrus sinensis; type=EST; length=725bp
GCGGAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGTCA
CCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAACT
TTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAAAA
GTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATCGC
AAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCTTG
TCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTTGG
GAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTCCA
AGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTTTC
AAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCCTC
TGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGATG
AACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTGGC
CTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTTGA
TGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGAGC
TTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCCTT
GGTGTCGTAAAGGAGACGGAAGTTC
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