CN189036

Overview
NameCN189036
Unique NameCN189036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2700 contig Csv1_Contig2700:577..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.552e-41
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            MLLSEV LG++YELKKA  MDKPP GKHSTKGLGKTVP ES+FVKWRDDV VPCGKP PS++R+SELMYNEYIVYNT+QVKMQFLLKVRFHHK
Sbjct:  887 MLLSEVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFVKWRDDVVVPCGKPVPSSIRSSELMYNEYIVYNTSQVKMQFLLKVRFHHK 979          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.520e-40
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            MLLSEV LG++YELKKA  MDKPP GKHSTKGLGKTVP ES+F KWRDDV VPCGKP P++++ SELMYNEYIVYNT+QVKMQ+LLKVRFHHK
Sbjct:  884 MLLSEVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFAKWRDDVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHHK 976          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            MLLSEV LGE++EL KAKYMDKPP GKHSTKGLGK VPQ+S+F KWR DVTVPCGKP  S V+ASELMYNEYIVY+TAQVK+QFLLKVRF HK
Sbjct:  890 MLLSEVALGEIHELTKAKYMDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELMYNEYIVYDTAQVKLQFLLKVRFKHK 982          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  919 ILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTAPDPSASIT-LDGVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG ++ELK A  + K P GKHS KGLG+T P  S  V+  D V VP GK   +N+  + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct:  902 ILLGEVALGNMHELKAASQITKLPKGKHSVKGLGRTAPDPSATVQL-DGVDVPLGKGTSANISDTSLLYNEYIVYDIAQVNLKYLLKLKFNYK 993          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            ++L EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   + V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  918 IMLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASIT-LEGVEVPLGTGIPSGVNDTALLYNEYIVYDIAQVNLKYLLKLKFNFK 1009          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G    S V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  919 ILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANIS-LDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   + V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  918 ILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASIT-LEGVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1009          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            +LL E  LG +YELK A+++ K P GKHS KGLGKT P  S  +   D V VP G    S V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  921 ILLGEAALGNMYELKHARHISKLPKGKHSVKGLGKTTPDPSASIT-VDGVEVPLGTGISSGVNDTCLLYNEYIVYDIAQVHLKYLLKLKFNFK 1012          
BLAST of CN189036 vs. ExPASy Swiss-Prot
Match: PARP_SARPE (Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  416 MLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 694
            MLLSEV LG++ E   AKY+ K P+ KHS  G G+T+P  S+ +   D V +P GKP  ++   S L+YNE+I+Y+ AQV +Q++L++ F +K
Sbjct:  904 MLLSEVALGDMMECTAAKYVTKLPNDKHSCFGRGRTMPNPSESIIREDGVEIPLGKPITNDSLKSSLLYNEFIIYDIAQVNIQYMLRMNFKYK 996          
The following BLAST results are available for this feature:
BLAST of CN189036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PARP1_MAIZE1.552e-4184.95Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP... [more]
PARP1_ORYSJ6.520e-4080.65Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub... [more]
PARP1_ARATH4.226e-3981.72Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal... [more]
PARP1_RAT4.858e-1952.69Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu... [more]
PARP1_XENLA8.286e-1950.54Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop... [more]
PARP1_MOUSE1.082e-1850.54Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=... [more]
PARP1_HUMAN1.413e-1851.61Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=... [more]
PARP1_CRIGR1.413e-1851.61Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise... [more]
PARP1_BOVIN1.197e-1750.54Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA... [more]
PARP_SARPE1.563e-1745.16Poly [ADP-ribose] polymerase OS=Sarcophaga peregri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189036 ID=CN189036; Name=CN189036; organism=Citrus sinensis; type=EST; length=695bp
TTTTTTTTTTTTTTTTTGTCTTTGCATGTTTCTTAAATTTATACCTGATT
GACAGGGACACTTATCCGGAAATAATCCTGCCAAATGTAGTACAAGAAAC
TTGGATTTTGTGTATCTAATTGTGTTGGCATAATCTAACAAAAGGAAAGC
TAACGCCAGATGATATGGCGGAAGATAGCATCCTCACTAAAGCTTAAGAA
ACACCAAAGTACCCTTTTTTTACACATTTACCAACATCATTTACATAGCC
AAAAGCAGCAGTTGAAAGATCTCCAGGCAAACCCCAAAATGAGATCTTAC
AATCTTATCCAAGAGTTAAAATTTCTCATGTGGTAATTAAAGACATTCAG
ATATTCAGACAATCAGTCATGACCTTTCCCAAAAGAGAGTGGGCATCCAG
TTACCTCCTTCATCTCTTGTGATGAAACCTCACCTTCAACAGGAACTGCA
TCTTAACTTGAGCAGTATTATAAACAATGTATTCATTGTACATCAGCTCA
GAAGCCCTGACATTTGAAGGTGCTGGTTTTCCACATGGCACAGTGACATC
ATCTCTCCACTTCACAAAATCAGATTCCTGTGGTACAGTCTTGCCAAGTC
CTTTAGTGGAGTGCTTCCCATCAGGTGGTTTATCCATATACTTCGCCTTC
TTGAGCTCATAAACCTCTCCCAAGCCCACTTCACTCAGAAGCATT
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