CN189034

Overview
NameCN189034
Unique NameCN189034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10179 contig Csv1_Contig10179:231..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189034 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.135e-67
Identity = 128/168 (76.19%), Postives = 145/168 (86.31%), Query Frame = 2
Query:    5 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAK---NQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 496
            AVRK+R  EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H     + +A+ SQ   A SMRSRRTPTWA+PR SDDGYSSDSVLRHASSDF+KMGQRIFVFIVGGATRSEL+VCHKL+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct:  500 AVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666          
BLAST of CN189034 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 111/168 (66.07%), Postives = 136/168 (80.95%), Query Frame = 2
Query:    8 VRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVH----AKNQSAAISQPPVAHSMRSRRTP-TWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI 496
            +RK+R GEE  W LSRFYP++EELIEKL K ELPKD+Y  +N+PSP+      A  Q++   QP  A SMRSRRT  TWARPR+SDDGYSSDSVL+H SS+ +K+GQR+FVF++GGATRSEL   HKL+ KL REIILGS+SLDDPPQFITK+KML+ D+L+LDD+QI
Sbjct:  500 IRKERIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIPSASTQTSPAHQP--AQSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLSSKLKREIILGSSSLDDPPQFITKLKMLSTDDLTLDDLQI 665          
BLAST of CN189034 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.509e-55
Identity = 112/165 (67.88%), Postives = 128/165 (77.58%), Query Frame = 2
Query:    5 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT-VDELSLDDIQI 496
            A R+DR GE QTWQLSRFYP++EEL+EKL K  LPK DYPCMNEP PT ++ + S + S P + HS   RRTPTWAR   SDDGY SDSVL  ASS FK+ GQRIFVFIVGGATRSELRVCHKLT KL+RE+ILGS+S  DP  F+TKMK L   +E+SLDDI I
Sbjct:  502 AARRDRVGETQTWQLSRFYPIVEELVEKLSKGHLPKQDYPCMNEPKPTFYSGSLSPSAS-PVLPHS---RRTPTWARRHLSDDGYFSDSVLGRASSGFKRKGQRIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDPLTFLTKMKQLNEEEEISLDDIVI 662          
BLAST of CN189034 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.312e-54
Identity = 106/167 (63.47%), Postives = 131/167 (78.44%), Query Frame = 2
Query:    5 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAI--SQPPVA--------HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDEL 475
            A RKDR+GEE+TWQL RFYPMIEEL+EKL K +L K DY CMN+ S    ++ ++ ++  S  P A        HSMRSRRT TWARP +SDDGYSSDSVL+ AS++FKK+GQRIFVFI+GGATRSELRVCHKLT  L RE++LGSTS DDPPQ+ITK+K+L+  ++
Sbjct:  494 ANRKDRSGEEETWQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAPTAVPERKATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFDDPPQYITKLKLLSEKDI 660          
BLAST of CN189034 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51
Identity = 101/156 (64.74%), Postives = 122/156 (78.21%), Query Frame = 2
Query:    5 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSM--RSRRTPTWARPRNSDDGYSSDS-VLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT 463
            A R +R   ++TW LSRF+P+IEELIEKL K  LP ++YP M+EPS T     QSAA ++P  A  M  RSRRTPTWA+ RNSDD  SSDS VLRH S+DFK++G RIFVF++GGATRSELR  HKLT KL REI+LGS+S+DDPPQFI+K+KMLT
Sbjct:  497 AARTERQDGDETWALSRFFPLIEELIEKLSKGALPLNEYPSMSEPSSTEQGSTQSAAATKPAQAQPMSRRSRRTPTWAKSRNSDDSQSSDSSVLRHGSNDFKRLGNRIFVFMIGGATRSELRTVHKLTMKLKREIVLGSSSIDDPPQFISKLKMLT 652          
The following BLAST results are available for this feature:
BLAST of CN189034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH5.135e-6776.19SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ORYSJ6.291e-5766.07Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ARATH4.509e-5567.88Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ARATH1.312e-5463.47Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1B_ORYSJ5.158e-5164.74Probable protein transport Sec1b OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189034 ID=CN189034; Name=CN189034; organism=Citrus sinensis; type=EST; length=725bp
CGGAGCAGTTAGGAAAGACCGCACTGGTGAAGAACAAACATGGCAGTTAT
CACGCTTTTACCCGATGATAGAGGAACTCATAGAAAAACTTGGGAAAAGA
GAACTACCAAAGGATGATTATCCGTGTATGAATGAGCCGAGTCCAACCGT
CCATGCGAAAAACCAGTCTGCAGCAATTAGTCAACCACCTGTTGCTCATT
CAATGAGATCCAGACGGACACCGACATGGGCTCGTCCTCGAAACTCTGAT
GATGGTTATTCAAGTGATTCAGTACTAAGACATGCATCTAGTGATTTCAA
GAAGATGGGCCAACGTATTTTTGTATTTATTGTTGGCGGAGCTACCAGAT
CAGAGTTAAGGGTGTGTCACAAGCTCACAAGAAAGCTGAACAGAGAAATC
ATTCTAGGCTCCACAAGTCTGGATGATCCGCCTCAATTTATCACGAAAAT
GAAGATGCTAACAGTAGACGAACTGTCATTGGATGATATCCAGATCTAAA
CCTGCTGGGCGGAGTCCGGAGAGTTGAGCTTCGGCTACAGTCCTTCGCCT
TCATCCTAAACCATTCATGTATATCATTCTCATTCAATCCATTTTTTTCA
ACAATTAATGCCACATCACATGTATGTCTCCAGAATTATGTAGCGGCTGT
CTAGAATTATGCAGTTTGTGTGTATTATATAATTGATGTACTGATTCACC
AAGAAACTCACGTTTATGATAATTG
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