CX070053

Overview
NameCX070053
Unique NameCX070053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX070053_ssr432 microsatellite CX070053_ssr432:432..443. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX070053 vs. ExPASy Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 54/71 (76.06%), Postives = 66/71 (92.96%), Query Frame = 2 
Query:    2 ILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESISKISFDDLREGLL 214
            +LGSYAV++L KNSSVYVEGDIE RVYNDSI+ EVK+IPEIC+RRDG +R++K GESISKISFD+L+EGL+
Sbjct:  131 VLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGESISKISFDELKEGLI 201
The following BLAST results are available for this feature:
BLAST of CX070053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SSBP_ARATH7.149e-2676.06Single-stranded DNA-binding protein, mitochondrial... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14E02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14E02-I4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070053 ID=CX070053; Name=CX070053; organism=Citrus sinensis; type=EST; length=485bp
AATACTCGGGTCTTATGCCGTCAAACAACTTGTCAAAAACTCTTCAGTTT
ATGTTGAGGGTGACATTGAAATTAGAGTTTATAATGACAGCATTAATGGT
GAAGTAAAGAATATCCCAGAGATATGCATTCGTCGTGATGGGACACTTCG
CCTTGTAAAGTCTGGGGAAAGCATCAGCAAAATATCCTTTGATGATTTGC
GAGAGGGATTGCTTTAGCTGAAAGTCAATAGACACGTTGCGGAAATCTTA
TTCATTTGTAAGTGGGAGAAGCTGAAACCTAACTTTTGTAAGAAACAGAT
ATTGTAACTAGCCTGGAGAAAATGATCCTTTGATGGTTTTATAGTTTTTG
TTATGACCTGGTCTTTTAGTCTGTCTTTTCCTCTCTCTATGGATATGACT
ATTTCTGCCCGTGAATATGATTATTTCTGAATCTCTCTCTCTCACGCTCT
CTCTTTAATGGTGATTTGATATGATATTTAAGGTC
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