CN189023

Overview
NameCN189023
Unique NameCN189023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9407 contig Csv1_Contig9407:285..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_HUMAN (Ubiquinone biosynthesis monooxygenase COQ6 OS=Homo sapiens GN=COQ6 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = -1
Query:  158 EVPPRVVKL-AFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYAS 568
            ++PP V ++ A  R++FPL L H   YV  RV LIGDAAH VHPLAGQGVN+GFG+  +L+  ++     G D+G    L  YE ER+  N  ++A  D  ++ Y     PL +L          +SPLK  I+++AS
Sbjct:  330 QLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFAS 467          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_MOUSE (Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus musculus GN=Coq6 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = -1
Query:  158 EVPPRVVKL-AFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYAS 568
            ++PP + K+ A  R +FPL L H   YV  RV LIGDAAH +HPLAGQGVN+GFG+  +L   ++     G D+G    L  YE +R+  N  ++A  D  ++ Y     PL +L          +SPLK  I+++AS
Sbjct:  331 QLPPSIAKVDAKSRALFPLGLGHAAEYVRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 468          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_DICDI (Ubiquinone biosynthesis monooxygenase COQ6 homolog OS=Dictyostelium discoideum GN=coq6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 59/141 (41.84%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  152 PRVVKLAFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGF-----QKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASGE 559
            P +  L  +R  FPL + H  NY   RV  IGDA+H VHP+AGQGVNLG  +  TLS II + +  G DIG+A +LK++E  RKP N+ M+  +D           FV    L   G +  +    ISPLK  II  + GE
Sbjct:  354 PPIEGLVSKRASFPLRIDHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAMMLKRFEEIRKPENLKMLLSIDTLFNLFTNNSIFVT--GLRNFGMSLLNN---ISPLKNLIIGVSKGE 489          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_YEAST (Ubiquinone biosynthesis monooxygenase COQ6 OS=Saccharomyces cerevisiae GN=COQ6 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = -1
Query:  146 PPRVVKLAFE-RMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASGEQR 562
            PPRVV +  + R  FPL L H + Y + RV L+GDAAHT HPLAGQG+N+G  +   L   + + +  G DIG +  L+ + AER P+N V++ + D   K Y  +F P+  L     +    I P+K  II    G ++
Sbjct:  340 PPRVVSIIDKTRARFPLKLTHADRYCTDRVALVGDAAHTTHPLAGQGLNMGQTDVHGLVYALEKAMERGLDIGSSLSLEPFWAERYPSNNVLLGMADKLFKLYHTNFPPVVALRTFGLNLTNKIGPVKNMIIDTLGGNEK 479          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_BOVIN (Ubiquinone biosynthesis monooxygenase COQ6 OS=Bos taurus GN=COQ6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = -1
Query:  158 EVPPRVVKL-AFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYAS 568
            ++PP V ++ A  R++FPL L H   YV  R+ LIGDAAH VHPLAGQGVN+GFG+  +L   ++     G D+G    L  YE +R+  N  ++A  D  ++ Y      + +L          + PLK  I+++AS
Sbjct:  331 QLPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRVHPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETDRQRHNTALLAATDLLKRLYSTRATLVVLLRTWGLQATNAVYPLKEQIMAFAS 468          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_CAEEL (Probable ubiquinone biosynthesis monooxygenase coq-6 OS=Caenorhabditis elegans GN=coq-6 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 45/139 (32.37%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  149 PPRVVKLAFE-RMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASGEQ 562
            PP V+ +  + R  FPL   + ++Y++ R  LIGDAAH +HPLAGQGVNLG+ +   L +++ + +  GADIG    L++Y++  +  N+ +M  +D   + Y  D   +    A   +    + P+K  +++Y S  +
Sbjct:  313 PPHVITVQDKSRASFPLGFGNAHSYITTRCALIGDAAHRMHPLAGQGVNLGWSDVQILDKVLGDAVREGADIGSITYLREYDSAAQKHNLPVMVSVDLLNRLYRTDAPAIVAARAFGLNAFNSLGPVKNFLMNYLSAHR 451          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_DROME (Putative ubiquinone biosynthesis monooxygenase COQ6 OS=Drosophila melanogaster GN=CG7277 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 52/140 (37.14%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  152 EVPPRVVK-LAFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASGE 568
            + PPRV   L   R  FPL   H ++YV     L+GDAAH VHPLAGQGVNLGF +   L   +A G   G  +G+   L KYE +    N+ +M  + G    Y   F P+ +L +      Q + P+K   +  A G+
Sbjct:  338 QYPPRVCGVLDKSRATFPLGFLHASSYVCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVESLAAGAYAGFKLGDKQHLIKYERKCLAKNVPIMLGVHGLHTLYATQFSPVVLLRSLGLQLTQNLPPVKNLFMRGAMGQ 477          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: UBIF_ECOLI (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase OS=Escherichia coli (strain K12) GN=ubiF PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  155 FPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASG 523
            FPL+ +H   YV   + L+GDAAHT+HPLAGQGVNLG+ +   L  ++    + G       +LK+Y+  R   N +M + +D F  G+  +  PL  +       A+    LKR  + YA G
Sbjct:  268 FPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSNNLPPLRFMRNLGLMAAERAGVLKRQALKYALG 390          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: VISC_ECOLI (Protein visC OS=Escherichia coli (strain K12) GN=visC PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  266 KLAFERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQ 547
            K+   R VFPL+ ++   + S R+ L+GDAAHT+HPLAGQGVNLGF +A  L   +      G DIG+   L++YE  RK +  +M+A + GF+
Sbjct:  261 KVESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFR 354          
BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: COQ6_SCHPO (Probable ubiquinone biosynthesis monooxygenase coq6 OS=Schizosaccharomyces pombe GN=coq6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  248 EVPPRVVKLAF-ERMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVD 568
            +VPP + ++    R  FPL L HV+ YV + + L GDAAH  HPLAGQG+N G  +  +L   ++  I  G DIG  F L+ Y  +R   N V + V+D F K Y ++
Sbjct:  326 QVPPVITEIVSGSRAAFPLRLAHVDEYVKEGIALCGDAAHNTHPLAGQGLNTGIQDVESLISALSFAIKHGQDIGSVFSLQPYFRDRYFKNHVYLGVVDKFHKLYAME 433          
The following BLAST results are available for this feature:
BLAST of CN189023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
COQ6_HUMAN9.299e-2341.30Ubiquinone biosynthesis monooxygenase COQ6 OS=Homo... [more]
COQ6_MOUSE1.343e-2139.86Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus ... [more]
COQ6_DICDI3.307e-2041.84Ubiquinone biosynthesis monooxygenase COQ6 homolog... [more]
COQ6_YEAST4.319e-2038.57Ubiquinone biosynthesis monooxygenase COQ6 OS=Sacc... [more]
COQ6_BOVIN3.657e-1937.68Ubiquinone biosynthesis monooxygenase COQ6 OS=Bos ... [more]
COQ6_CAEEL2.006e-1732.37Probable ubiquinone biosynthesis monooxygenase coq... [more]
COQ6_DROME2.620e-1737.14Putative ubiquinone biosynthesis monooxygenase COQ... [more]
UBIF_ECOLI1.699e-1635.772-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy... [more]
VISC_ECOLI4.942e-1644.68Protein visC OS=Escherichia coli (strain K12) GN=v... [more]
COQ6_SCHPO1.878e-1540.74Probable ubiquinone biosynthesis monooxygenase coq... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189023 ID=CN189023; Name=CN189023; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTTTAAAAAAACCCAATCTTTTATTTCGTAGTTATCA
ATGTACAGACAGAATCCAGTCATTTCAACTCATCTAACATTATTCAAATA
CCAAGGTCTTAACTCTTAAGTAAAAAGTGGCAAAAGAAAAGGGAGTCTCT
GTTCTCCTGAAGCATACGAAATAATATTCCTCTTAAGAGGTGAAATATAC
TGAGCTCCGTGAAATGCAGCTGCCCCCAGTATGTTTAGAGGCCCGAAATC
AACAAAATACCCCTTCTGGAAGCCATCAAGGACAGCCATCATTACTATAT
TTGCGGGTTTTCTTTCTGCTTCATACTTTTTCAGTAAAAATGCCTCCCCA
ATGTCTGCCCCTACTGCAATTCCCTCAGCAATAATTCTAGAAAGAGTAAA
TGCCTCCCCAAAACCCAAATTAACACCTTGACCAGCTAGAGGATGAACAG
TGTGTGCAGCATCACCAATTAAAACAACACGCTTCGACACATAGTTATTA
ACATGCTTTAATGACAGTGGAAACACCATTCGTTCAAATGCCAACTTGAC
CACTCTTGGGGGTACTTCAAAGCACTCCTTCACTGACAAAGTTGCATCTC
CTCTAAACCAAGAAAACATATCCACACTACCGCTTGAGATTGACTTTGGA
TGAGGACCATATCCATAATCAAGAGCATGATTTAAAAT
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