CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189021_ssr239 microsatellite CN189021_ssr239:239..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2698 contig Csv1_Contig2698:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 2
Query:  356 FPITARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            FP TAR IS +  P  N+  +LGFG RP PDPA++  SAIAQGPDDDVP+PGQQFAQFGAGCFWG ELA+QRVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD  W
Sbjct:   40 FPKTARSISVYKSPMNNLFTRLGFGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFW 163          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.236e-49
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 2
Query:  356 FPITAR-PISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            FP T+R PIS +  P  N+ N+LGFG RP    A   ++AIAQGPDDDVP+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD  W
Sbjct:   39 FPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFW 164          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 90/132 (68.18%), Postives = 108/132 (81.82%), Query Frame = 2
Query:  356 FPITA-RPI-----STHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            FP+T+ +P+     S+     M+ L +LG G R +P  AS + S+IAQGPDDD+PAPGQQFAQFGAGCFWGVELAFQRVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD  W
Sbjct:   35 FPVTSTKPLFTLRHSSSTPKIMSWLGRLGXGTR-TPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFW 165          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  455 STENSAIAQGPDDDVP-APGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            ST N A+   PD D P  PG +FAQF AGCFWGVELAFQRV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL   W+
Sbjct:   10 STTNPAL--DPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWS 102          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  452 ASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            +ST N+       D    PG + AQF +GCFWG EL FQRV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL   W+
Sbjct:    3 SSTTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWS 97          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R  P P + ++           PAP QQ A FG GCFWG E  F + PGV  T VGY+ G+  NP+YE+VCSG T H EVV V +DP++ SFD LL   W
Sbjct:   24 RAEPLPVAQQHHVNGNPIKPPFPAPMQQ-AVFGLGCFWGAERRFWQQPGVFSTAVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFW 122          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  500 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P    + A FGAGCFWGVE AF+RVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD  W
Sbjct:    3 PEKSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFW 80          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  440 SPDPASTENSAIAQGPD------DDVPAP---GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            +P+ A    SA    PD      + + AP   G + A FG GCFWG E  F ++PGV  T VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL   W
Sbjct:   15 APNEALPGRSATMPVPDKHFVNGNPLKAPFPQGMETALFGLGCFWGAERKFWQIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFW 121          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G Q A FG GCFWG E  F  +PGV  T VGY+ GY  NPSYE+VCSG T H EVV+V+YDP + +++ LL   W
Sbjct:   44 GTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEVCSGRTGHAEVVQVRYDPTKIAYEDLLKVFW 118          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            A FGAGCFWGVE AF++V GV  T VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD  W+
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWS 81          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_BRANA4.504e-5073.02Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH2.236e-4973.23Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA1.356e-4668.18Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_SOLLC1.194e-2660.00Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN3.473e-2656.84Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_PSEMY1.846e-1948.00Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_METMJ3.149e-1955.13Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA1_SYNY33.149e-1944.86Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_SALAI7.014e-1956.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METTH7.014e-1958.33Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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