CN189020

Overview
NameCN189020
Unique NameCN189020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189020 vs. ExPASy Swiss-Prot
Match: Y355_SYNY3 (Uncharacterized transporter sll0355 OS=Synechocystis sp. (strain PCC 6803) GN=sll0355 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  395 LVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLASGFCRRTSAGLGSV 664
            L++PFF WGTAMVAMK VL     FFVA  RLIPAG+L++ +A  Q R  P  +  W  I LFALVD + FQGFLA G   RT AGLGSV
Sbjct:   17 LIAPFFLWGTAMVAMKGVLADTTPFFVATVRLIPAGILVLLWAMGQKRPQPQNWQGWGWIILFALVDGTLFQGFLAQGL-ERTGAGLGSV 105
The following BLAST results are available for this feature:
BLAST of CN189020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y355_SYNY34.750e-2158.89Uncharacterized transporter sll0355 OS=Synechocyst... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189020 ID=CN189020; Name=CN189020; organism=Citrus sinensis; type=EST; length=664bp
GCAGGTGAAGCTAAGCGCACCAGGACTGTAAAGATGGCTTGGCCGGTCCT
CTGCTTCTGCTTCTTCCACCTTTAACTCTTCTTTTTTGCTTCGATCATCT
TTATCATCCTATTCAAACAAAAAGCTTAGCAGCAACCATGTCGCGCATGC
ACCGCCTTCACCTTCTTCTCCTTATATTACTATTAATTCATTCAAGAAAA
GATCCACTATTGTCACAAATTGTACAACAACTAACAAGAAAAACATGGAA
TCTTCATCCACCGTTGATTGTGTCGGAACAGACACAGACGTCGAGTGTCT
GATCTCCCCAACTGATAAAGAGGAAATAGAACAAGAGCAAGTAGAACACG
ATGGCCAAGTGATGGAGCTGGGGATGCTTTTGGAATGGGCAGTGTTGGTG
TCACCATTCTTCTTTTGGGGAACCGCAATGGTGGCAATGAAGGAGGTTTT
GCCTAAGGCTGGCACTTTCTTTGTGGCTGCATTTCGTTTGATTCCTGCTG
GTTTGTTGTTAATAACTTTTGCTAGCTCTCAAGGTCGAAAGCTTCCCTCT
GGATTCAATGCTTGGGTTTCCATCTTTCTCTTTGCTCTTGTTGATGCTTC
ATGCTTTCAGGGTTTTCTTGCCTCAGGGTTTTGCAGAAGAACTTCTGCAG
GTTTGGGTAGTGTG
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