CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:54..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.761e-64
Identity = 129/183 (70.49%), Postives = 144/183 (78.69%), Query Frame = 1
Query:   70 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGSLL 615
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+E N   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG LL
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLL 183          

HSP 2 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-LNGANHLILREDDVVGIL 522
            +KPL DRV +K+   EEKT GG+ L  T + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+N++ LR  DV+ IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.469e-50
Identity = 102/186 (54.84%), Postives = 134/186 (72.04%), Query Frame = 1
Query:   70 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGSLL 615
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E++G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+G LL
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLL 185          

HSP 2 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 37/93 (39.78%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELE-LNGANHLILREDDVVGIL 522
            +KPL DR+L+K+  VE KT GG+ L  +++ KP  G VVA G G    +  ++ + V  G  V+YSKYAG + + ++G+++++LR  DV+ +L
Sbjct:  162 LKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVL 254          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++L+G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++L+G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++L+G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILETDE 534
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+ ++G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 49/94 (52.13%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E++G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++L+G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRVLVK    EEKT GG+F+P TA+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++L+G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++++G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH1.761e-6470.4920 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL2.469e-5054.8420 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_THEPX1.508e-2355.4310 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP31.508e-2355.4310 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR1.508e-2355.4310 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_RHOMR1.508e-2350.5310 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_NATTJ9.777e-2352.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_THETN2.178e-2254.3510 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_DESVM2.178e-2255.3210 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESVV2.845e-2253.1910 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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