CN189011

Overview
NameCN189011
Unique NameCN189011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:407..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.385e-50
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  107 QRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.644e-47
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QRSQRNL+GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  109 QRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 87/139 (62.59%), Postives = 103/139 (74.10%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 667
            QRSQRNLLGE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  105 QRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38
Identity = 87/140 (62.14%), Postives = 104/140 (74.29%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QR+QRNLLGE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  109 QRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.654e-37
Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QR+QRNLLGE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  109 QRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.095e-30
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = -1
Query:  446 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 667
            QRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:  107 QRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 5.095e-30
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = -2
Query:  334 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 426
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE-----DCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 667
            QR QRNLLGE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L +   V    +    E     +  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  106 QRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  108 QRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  257 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 667
            QR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  108 QRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CN189011 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 69/147 (46.94%), Postives = 91/147 (61.90%), Query Frame = -1
Query:  260 QRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSA------EDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 667
            QR QRNLLGE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +L +   V +  +          ++  Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  106 QRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
The following BLAST results are available for this feature:
BLAST of CN189011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
AGL9_PETHY8.385e-5075.18Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA6.644e-4770.00MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_ARADE1.136e-3862.59Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP3_ARATH4.316e-3862.14Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL3.654e-3760.56Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC5.095e-3083.78Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH1.303e-2647.95Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS7_ORYSJ1.701e-2649.31MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.701e-2649.31MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP1_ARATH2.902e-2646.94Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189011 ID=CN189011; Name=CN189011; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTATTCTCAACAGGCTTTGTTAAATAAAGATAAGCGCGNGTGA
TTGAAAATACACGCACACACAACATAGCTATATATCGTCATCAGTTTCCC
TAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGATTGCG
TGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTTGCTG
ATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGCTCTC
TTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCTGCTG
TGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGTGGGT
TCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTGGTTT
AAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTGTTCA
CTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTATTTGCTTCGCTC
AGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTG
AGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAA
GTGACTCAAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGA
TTCCTTTGGGATCTCTG
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