CN189006

Overview
NameCN189006
Unique NameCN189006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189006_ssr262 microsatellite CN189006_ssr262:262..273. BLAST: Citrus ESTs to SwissProt
Csv1_Contig5851 contig Csv1_Contig5851:156..797. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of CN189006 vs. ExPASy Swiss-Prot
Match: MUC1_YEAST (Flocculation protein FLO11 OS=Saccharomyces cerevisiae GN=MUC1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 62/208 (29.81%), Postives = 94/208 (45.19%), Query Frame = 3
Query:    6 SSLPFPTTEASLSFPTTDAGLSFPATGSGLPFPT---TTQETIQIQVSSATNSSLPFPTTDSGLSFPTTAQETIRIQVSSAT---NSSLPFPTTTKETIQI*VSSATNSSLPFPTTNAGLSFPTTSQETIQVPVSSTTDSSLPFPTTTQETIQ-----ILVSSATNSSLPFPTTDAGLSFPTTSQETVRVQVSSATNSSLPFPTATSA 596
            SS P PT  +S +  ++    S     S  P PT   +T E+    V+S+T  S   P T S     TT   +  +   S++   +SS P  ++T E+    V+S+T  S   P T++     TT   +  V  S+T  SS P PT +  T +     +  S+  +SS P PT     S  TT   +  V  S+  +SS P PT +S+
Sbjct:  325 SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSS-----TTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSS-----TTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTP----SSSTTESSSAPVTSSTTESSSAPVPTPSSS 518          

HSP 2 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 78/240 (32.50%), Postives = 106/240 (44.17%), Query Frame = 3
Query:    6 SSLPFPT----TEASLSFPTTDA---GLSFPAT-----GSGLPFPT---TTQETIQIQVSSATNSSLPFPTTDS-------GLSFPTTAQETIRIQVSSATNSSLPFPT---TTKETIQI*VSSAT--NSSLPFPT----TNAGLSFPTTSQET------IQVPVSSTTD-SSLPFPTTTQETIQ-----ILVSSATNSSLPFPTTDAGLSFPTTSQETVRVQVSSATNSSLPFPTATSA 596
            SS P PT    T  S S P T +     S P T      S  P PT   +T E+    V+S+T  S   P T S        ++  TT   +  +  S+  +SS P PT   +T E+    V+S+T  +SS P PT    T    S P TS  T      +  P SSTT+ SS P PT +  T +     +  S+  +SS P PT     S  TT   +  V  S+  +SS P PT +S+
Sbjct:  352 SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTP----SSSTTESSSTPVTSSTTESSSAPVPTPSSS 587          

HSP 3 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 69/229 (30.13%), Postives = 97/229 (42.36%), Query Frame = 3
Query:    6 SSLPFPTTEASLSFPTTDAGLSFPATGSGLPFPTTTQETIQIQV--------SSATNSSLPFPTTDSGLSFPTTAQETIRIQVSSATNSSLPFPTTTKETIQI*V---SSATNSSLPFPTTNAGLSFPTTSQETIQVPVSSTTD-SSLPFPTTTQETIQILV---SSATNSSLPFPTTDAGLSFPTTSQETVRVQVSSATNSSL-PFPTATSALRLCIS-PSSLPLLES 641
            SS P PT  +S +  ++    S     S  P PT +  T +           S+  +SS P PT  S     TT   +  +  S+  +SS P  ++T E+    V   SS+T  S   P      S   +S   +  P SSTT+ SS P  ++T E+    V   SS+T  S   P      S   +S   V    SS T SS+ P PT +S+  +  S PSS P   S
Sbjct:  607 SSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSS----TTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSVAPVPTPSSSSNITSSAPSSTPFSSS 831          
BLAST of CN189006 vs. ExPASy Swiss-Prot
Match: MUC5A_HUMAN (Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 71/215 (33.02%), Postives = 97/215 (45.12%), Query Frame = 3
Query:    6 SSLPFPTTEASLSFPTTDAGLSFPATGSGLPFPTTTQETIQIQVSSATNSSLPFPTTDSGLSFPTTAQETIRIQVSSA---TNSSLPFPTTTKETIQI*VSSATNSSLPFPTTNAGLSFPTTSQ------ETIQVPVSSTTD----SSLPFPTT-TQETIQILVSSATNSSLPFPTTDAGLSFPTTS----QETVRVQVSSATNSSLPFPTATSA 596
            S+   PTT  + S PTT    +   T S  P  +TT       +S+ T S++  PTT S  S PT +  +     SSA     +S P  +TT   I   +S+ T S+   P T+  +S PTTS        T   P +STT     S+   PTT T  T Q  +SSA  SS     T + +S PTTS      T      +++ SS P  + TSA
Sbjct: 3119 STTSAPTTSTT-SAPTTSTTSTPQTTTSSAPTSSTTSAPTTSTISAPTTSTISAPTT-STTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQTST-ISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHTTSTTSPPTSSTSSTPQTSKTSA 3330          

HSP 2 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 69/209 (33.01%), Postives = 98/209 (46.89%), Query Frame = 3
Query:    6 SSLPFPTTEASLSFPTTDAG-LSFPATGSGLPFPTTTQETIQIQVSSATNS-SLPFPTTDSGLSFPTTAQETIRIQVSSATNSSLPFPTT-TKETIQI*VSSATNSSLPFPTTNAGLSFPTTSQETIQVPVSSTTDSSLPFPTTTQETIQILVSSATNSSLPFPTTDAGLSFPTTSQETVRVQVSSATNSSLPFPTATSALRLCISPSS 623
            SS+   T  ++ S PTT     S P+T S     TT+  T     +  T++ S P  TT S  +  TT+  T    +S+ T S++  PTT T        +SA  S+   PTTN   S PTTS  T   P++ST  +     T+T +T  I  SS T S+ P P T    S PTTS  T     +S T++     T+T    +  +P+S
Sbjct: 3086 SSITSTTQTSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAPTTST-ISAPTTSTISAPTTSTTSAPTASTTSAPTSTSSAPTTNT-TSAPTTS--TTSAPITSTISAPTTSTTSTPQTSTI--SSPTTSTTPTPQTST-TSSPTTS--TTSAPTTSTTSAPTTSTTSTPQTSISSAPTS 3285          
The following BLAST results are available for this feature:
BLAST of CN189006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MUC1_YEAST6.457e-1229.81Flocculation protein FLO11 OS=Saccharomyces cerevi... [more]
MUC5A_HUMAN8.433e-1233.02Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001C18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189006 ID=CN189006; Name=CN189006; organism=Citrus sinensis; type=EST; length=642bp
GAGGCTCCAGTTTACCATTCCCCACCACCGAAGCCAGTTTATCATTCCCC
ACCACAGACGCCGGTTTATCATTCCCCGCCACCGGTTCCGGTTTACCATT
CCCCACCACCACCCAAGAAACCATACAAATACAAGTCTCCTCCGCCACCA
ACTCCAGTTTACCATTCCCCACCACCGACTCCGGTTTATCATTCCCCACC
ACCGCCCAAGAAACCATACGAATACAAGTCTCCTCCGCCACCAACTCCAG
TTTACCATTCCCCACCACCACCAAAGAAACCATACAAATATAAGTCTCCT
CCGCCACCAACTCCAGTTTACCATTCCCCACCACCAACGCCGGTTTATCA
TTCCCCACCACCTCCCAAGAAACCATACAAGTACCAGTCTCCTCCACCAC
CGACTCCAGTTTACCATTCCCCACCACCACCCAAGAAACCATACAAATAC
TAGTCTCCTCCGCCACCAACTCCAGTTTACCATTCCCCACCACCGACGCC
GGTTTATCATTCCCCACCACCTCCCAAGAAACCGTACGAGTACAAGTCTC
CTCCGCCACCAACTCCAGTTTACCATTCCCCACCGCCACATCAGCCTTAC
GTCTGTGCATCTCCCCCTCCTCCTTACCACTACTAGAAAGTG
back to top