CN188996

Overview
NameCN188996
Unique NameCN188996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188996_ssr202 microsatellite CN188996_ssr202:202..213. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:86..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.235e-107
Identity = 204/217 (94.01%), Postives = 204/217 (94.01%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH IYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.393e-106
Identity = 203/217 (93.55%), Postives = 203/217 (93.55%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH IYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.859e-87
Identity = 174/225 (77.33%), Postives = 189/225 (84.00%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXS--------CSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++L                     CSGGVV+ASRDGKIV ENTLDARLDV F KKL
Sbjct:    1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHHGFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKL 224          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.528e-85
Identity = 167/217 (76.96%), Postives = 185/217 (85.25%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+L             CSGGVV+ASRDGKIV ENTLDARL+V FRKKL
Sbjct:    1 MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKL 216          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 4.768e-84
Identity = 161/217 (74.19%), Postives = 185/217 (85.25%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD +I+L             CSGGVV+ASRDGKIVCENTLDARLDV FR KL
Sbjct:    1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKL 217          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.942e-82
Identity = 164/217 (75.58%), Postives = 180/217 (82.95%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+L            SCSGGVV+ASRDGKIV ENTLDARL+V FRKKL
Sbjct:    1 MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKL 216          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.893e-81
Identity = 159/223 (71.30%), Postives = 183/223 (82.06%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTLDARL+V FR KL
Sbjct:    1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKL 223          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77
Identity = 147/219 (67.12%), Postives = 183/219 (83.56%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D +++L               CSGGVV+AS+DGKIVCENTLDARLDV FR+KL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKL 219          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_HETSC (V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 91/215 (42.33%), Postives = 137/215 (63.72%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRK 707
            ++D DV KQ++ M+ FI QEA EKA EI   AEEEFNIEK +LV+ +++KI + YE+KEKQVE+++KI+ S   N SR+K L+A+DD + N++E A   +  +S D   Y  +LKGL++Q L +L E  V+LRCRK D  +V  +L    EE  Q+   +  E+ +D++ +L              +GGV + ++DGKI   +TL+ARLD++  K
Sbjct:    3 ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGKLVQLQRQKIMEYYEKKEKQVELQRKIQRSNMQNQSRLKCLKARDDHLKNVLEEARANLSKISADRERYPAILKGLLLQGLFQLLESKVVLRCRKKDEEMVARILPECLEE-VQRTWGNRSEVKIDNEHFL----------SPESAGGVELLAKDGKIRVSSTLEARLDLIADK 206          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_DROME (V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.112e-40
Identity = 91/212 (42.92%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVV 698
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEKQVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ L ++ EP V+LRCR+ D  LV +VL +A E+Y  ++  +  E+ +D + +L               GGV + + +G+I   NTL++RLD++
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQINQN-VELFIDEKDFL----------SADTCGGVELLALNGRIKVPNTLESRLDLI 203          
The following BLAST results are available for this feature:
BLAST of CN188996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN5.235e-10794.01V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI3.393e-10693.55V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI7.859e-8777.33V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL2.528e-8576.96V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH4.768e-8474.19V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE_MESCR9.942e-8275.58V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE3_ARATH2.893e-8171.30V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH4.323e-7767.12V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE_HETSC8.515e-4142.33V-type proton ATPase subunit E OS=Heterodera schac... [more]
VATE_DROME1.112e-4042.92V-type proton ATPase subunit E OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188996 ID=CN188996; Name=CN188996; organism=Citrus sinensis; type=EST; length=739bp
GAGGGAATCGCTCTTCTCATTTTGATATCAACAATCTAATCAAATCAAAA
GATCCCGCGAAAATGAACGACGCTGATGTTTCGAAGCAGATCCAGCAGAT
GGTGCGGTTTATCCGCCAAGAAGCCGAAGAGAAAGCCAACGAGATCTCAG
TTTCTGCCGAAGAAGAATTCAACATAGAGAAGTTGCAGCTGGTGGAAGCA
GAGAAGAAGAAGATCAGACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGA
AATCAGAAAGAAGATTGAGTACTCCATGCAGCTGAATGCTTCTCGGATCA
AAGTTCTTCAAGCTCAGGATGATTTGGTCAGTAATATGATGGAGGCAGCA
TCAAAGGAGGTTTTGAATGTGAGTCGAGATCACAATTCATATAAGAAGCT
TTTGAAGGGTCTTATTGTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTG
TGTTACTGAGATGCCGCAAAGATGACCATCATTTGGTGGAGTCTGTTTTG
GAGTCAGCAAAAGAGGAATATGCACAGAAATTGCAGGTTCACCCACCAGA
GATAATTGTGGATCATCAAATCTATCTTCCGCCTGGCCCTGGCCATCATA
ATGCCCATGGTCCATCCTGCTCAGGAGGTGTCGTGGTGGCTTCTCGAGAT
GGGAAGATAGTATGTGAGAATACCCTTGATGCACGGTTGGATGTTGTGTT
CCGTAAAAAACTTTCCTGAGATCCGGAAGCACCTCGTCA
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