CN188995

Overview
NameCN188995
Unique NameCN188995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188995_ssr683 microsatellite CN188995_ssr683:683..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6837 contig Csv1_Contig6837:487..1200. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.450e-91
Identity = 177/190 (93.16%), Postives = 177/190 (93.16%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI QEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH IYL           PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   41 LQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.181e-90
Identity = 176/190 (92.63%), Postives = 176/190 (92.63%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI QEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH IYL           PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   41 LQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.826e-69
Identity = 144/198 (72.73%), Postives = 158/198 (79.80%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPS--------CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI QEYE+KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++L                     CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct:   41 LQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHHGFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.874e-68
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI  EYERKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+L             CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct:   41 LQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66
Identity = 130/190 (68.42%), Postives = 153/190 (80.53%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI Q+YE+KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD +I+L             CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:   41 LQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.769e-64
Identity = 130/196 (66.33%), Postives = 153/196 (78.06%), Query Frame = -3
Query:  144 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 713
            LQLVEAEKKKI QEYE+KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:   41 LQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.017e-64
Identity = 133/184 (72.28%), Postives = 149/184 (80.98%), Query Frame = -3
Query:  162 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 713
            LQLVEAEKKKI QEYERK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+L            SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL
Sbjct:   41 LQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQL 223          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.603e-57
Identity = 113/187 (60.43%), Postives = 149/187 (79.68%), Query Frame = -3
Query:  159 LQLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 713
            LQL+E+ K+K+ Q+Y+RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D +++L               CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:   41 LQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE2_BOVIN (V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 72/183 (39.34%), Postives = 114/183 (62.30%), Query Frame = -3
Query:  162 QLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 710
            +LV+ ++ KI + YE+KEKQ+E +KKI+ S   N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD ++ L              +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   44 RLVQTQRLKIMEYYEKKEKQIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQGLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYT-AVSHRCVEVQVDKEVQL----------ATDTTGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_HETSC (V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 70/183 (38.25%), Postives = 113/183 (61.75%), Query Frame = -3
Query:  162 QLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 710
            +LV+ +++KI + YE+KEKQVE+++KI+ S   N SR+K L+A+DD + N++E A   +  +S D   Y  +LKGL++Q L +L E  V+LRCRK D  +V  +L    EE  Q+   +  E+ +D++ +L           P  +GGV + ++DGKI   +TL+ARLD++  K  P++R  L
Sbjct:   44 KLVQLQRQKIMEYYEKKEKQVELQRKIQRSNMQNQSRLKCLKARDDHLKNVLEEARANLSKISADRERYPAILKGLLLQGLFQLLESKVVLRCRKKDEEMVARILPECLEE-VQRTWGNRSEVKIDNEHFL----------SPESAGGVELLAKDGKIRVSSTLEARLDLIADKITPQVRTAL 215          
The following BLAST results are available for this feature:
BLAST of CN188995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN6.450e-9193.16V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI4.181e-9092.63V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI1.826e-6972.73V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL5.874e-6872.11V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH7.181e-6668.42V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE3_ARATH1.769e-6466.33V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE_MESCR3.017e-6472.28V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE2_ARATH1.603e-5760.43V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE2_BOVIN2.413e-2939.34V-type proton ATPase subunit E 2 OS=Bos taurus GN=... [more]
VATE_HETSC2.043e-2838.25V-type proton ATPase subunit E OS=Heterodera schac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001C12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188995 ID=CN188995; Name=CN188995; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTATTCTGCAACATTATAATTTAAAATATGCAAACAAAC
ACTACATAATAAATTTTTATGGTCAATAACTAAACTTAAAAACTTCGGAC
ATGAATAATCAGAGGGTGACAATCAATTCAAATTAACTCATCATGCAGCA
ACCTGACTGACGAGCTGCTTCCGGATCTCAGGAAGTTTTTTACGGAACAC
AACATCCAACCGTGCATCAAGGGTATTCTCACATACTATCTTCCCATCTC
GAGAAGCCACCACGACACCTCCTGAGCAGGATGGACCATGGGCATTATGA
TGGCCAGGGCCAGGCGGAAGATAGATTTGATGATCCACAATTATCTCTGG
TGGGTGAACCTGCAATTTCTGTGCATATTCCTCTTTTGCTGACTCCAAAA
CAGACTCCACCAAATGATGGTCATCTTTGCGGCATCTCAGTAACACAGCT
GGCTCTTTCAGCCTGAGCAAACTCTGAACAATAAGACCCTTCAAAAGCTT
CTTATATGAATTGTGATCTCGACTCACATTCAAAACCTCCTTTGATGCTG
CCTCCATCATATTACTGACCAAATCATCCTGAGCTTGAAGAACTTTGATC
CGAGAAGCATTCAGCTGCATGGAGTACTCAATCTTCTTTCTGATTTCAAC
TTGCTTCTCTTTCCGCTCGTACTCTTGACTGATCTTCTTCTTCTCTGCTT
CCACCAACTGCAACT
back to top