CN188994

Overview
NameCN188994
Unique NameCN188994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188994 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.913e-12
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = -1
Query:  198 YCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVELQPL 335
            +CSEKYN TVV AA+KGY+V+SY+PLVPTERI+K+F+    E +PL
Sbjct:  195 FCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of CN188994 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-11
Identity = 28/37 (75.68%), Postives = 36/37 (97.30%), Query Frame = -1
Query:  225 YCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFS 335
            YC+EKYN+ +VS+A+KGY+VS+YLPLVPTE+IAKVFS
Sbjct:  129 YCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
The following BLAST results are available for this feature:
BLAST of CN188994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3550_ARATH3.913e-1265.22REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_PHAVU4.327e-1175.68Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188994 ID=CN188994; Name=CN188994; organism=Citrus sinensis; type=EST; length=374bp
TTTTTTTTTTTTTTTTTAACAATGGTCTTTAAAAATTAAATAACCCCTTT
TCCACTCCATTTTCAACCCAATACACATCCAGAAAGGGAAACATTTTCAC
TCCACAGCTTGCAAGAAAAATTGTGAGGCCAGAAAACAGAAAACAGAAAA
CACAGCTATCAATGCACAACAACATCAGCTTCATGTCCAGCAGAAGCCAG
AGGCTGCAATTCAACAACCCCGTTGCTGAACACCTTAGCAATCCTCTCAG
TAGGGACCAAAGGCAAATATGAGGAGACCTTGTACCCCTTATCTGCAGCG
CTCACCACTGTTTGGTTGTATTTTTCGGAACAATAGGCAGCAATTGGCAC
AACAACTTGAGCTACTTGAGGGAA
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