CN188992

Overview
NameCN188992
Unique NameCN188992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: XYNB_PRUPE (Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 92/151 (60.93%), Postives = 112/151 (74.17%), Query Frame = -1
Query:  265 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 717
            FP G G+SYTTFAH L+  P   SVP+ TSL A  N+T+ S  +RV+H +CN    L +HVDVKNTG M GTHTLLVF  PP G W+ +KQL+GF K+H+  G+ + VRI +HVCKHLSVVD+FGIRRIP+GEH L IGDL H +SLQ NL
Sbjct:  307 FPFGLGLSYTTFAHNLAHGPTLVSVPL-TSLKATANSTMLSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIHIATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQTNL 456          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 79/154 (51.30%), Postives = 109/154 (70.78%), Query Frame = -1
Query:  256 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGI 717
            +P GHG+SYT F H ++ AP    +PIA      +N T+S  +IRV H  C D +SLG+HV+V N G   GTHT+LVF+ PP G W+P KQL+ F++VHV  G  + V+++IHVCK+LSVVD+ G RRIP+G+H +HIGD  H++SLQA+  G+
Sbjct:  618 YPFGHGLSYTRFTHNIADAPKV--IPIAVR---GRNGTVSGKSIRVTHARC-DRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQASTLGV 765          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 86/155 (55.48%), Postives = 109/155 (70.32%), Query Frame = -1
Query:  265 FPLGHGMSYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 717
            FP G G+SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV+V NTGE  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD++G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:  620 FPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQPQL 774          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 61/153 (39.87%), Postives = 94/153 (61.44%), Query Frame = -1
Query:  274 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG-----LHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQ 717
            +  G G+SYT F+HTL KAP+  S+ +  +     +   S +AI     +C +A+S G     +H+ V+N G+  G HT+ +F  PPA + SP K L+GF+K+ +       VR  + +CK LSVVD+ G R+I +G+H LH+GDLKHS+S++
Sbjct:  634 YAFGDGLSYTKFSHTLVKAPSLVSLGLEENHVCRSSECQSLDAIG---PHCENAVSGGGSAFEVHIKVRNGGDREGIHTVFLFTTPPAIHGSPRKHLVGFEKIRLGKREEAVVRFKVEICKDLSVVDEIGKRKIGLGKHLLHVGDLKHSLSIR 783          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 57/151 (37.75%), Postives = 90/151 (59.60%), Query Frame = -1
Query:  277 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG----LHVDVKNTGEMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISL 717
            +     ++YT F H L KAP   S+ +  +     +   S +AI     +C +A+  G    +H++VKNTG+ AG+HT+ +F   P  + SP KQL+GF+K+ +       VR +++VCK LSVVD+ G R+I +G H LH+G LKHS+++
Sbjct:  624 YAFADALTYTKFDHQLIKAPRLVSLSLDENHPCRSSECQSLDAIG---PHCENAVEGGSDFEVHLNVKNTGDRAGSHTVFLFTTSPQVHGSPIKQLLGFEKIRLGKSEEAVVRFNVNVCKDLSVVDETGKRKIALGHHLLHVGSLKHSLNI 771          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = -1
Query:  274 FPLGHGMSYTTFAHTLSKAPNQFSVP-IATSLYAFKNTTISSNAIRVAH-----TNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQ 717
            +  G G+SYT F + +  AP + S+  +     + K        +R         N  +++   + V V NTGE+ G+H +++F+K PP  +  P KQLIG+ +VHV +  +      I  CK LSV +  G R IP+G H L +GDL+HS+S++
Sbjct:  637 YSFGTGLSYTKFEYKILSAPIRLSLSELLPQQSSHKKQLQHGEELRYLQLDDVIVNSCESLRFNVRVHVSNTGEIDGSHVVMLFSKMPPVLSGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHSLSVE 791          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = -1
Query:  301 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGEMAGTHTLLVFAKPP------AGNWSPNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 717
            +  G+G+SY++F+  +  AP+   +     +   K T++  + +     NC+D + + + + VKN G  +G+H +LVF KPP       G   P  QL+GF++V V     +   +D  VCK LS+VD  G R++  G H L IG
Sbjct:  620 YKFGYGLSYSSFSTFVLSAPSIIHIKTNPIMNLNKTTSVDISTV-----NCHD-LKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERVEVGRSMTEKFTVDFDVCKALSLVDTHGKRKLVTGHHKLVIG 758          
BLAST of CN188992 vs. ExPASy Swiss-Prot
Match: BXL7_ARATH (Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 44/150 (29.33%), Postives = 78/150 (52.00%), Query Frame = -1
Query:  298 FPLGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCN-------DAMSLGLHVDVKNTGEMAGTHTLLVFAKPPAGNWS---PNKQLIGFKKVHVTAGALQSVRIDIHVCKHLSVVDKFGIRRIPMGEHSLHIGD 717
            +  GHG+SY+ +++       +F     T+LY    +   +N+  V +T  +       D     + V+V+N GEMAG H +L+FA+   G        KQL+GFK + ++ G    +  +I +C+HLS  ++FG+  +  G++ L +GD
Sbjct:  617 YEFGHGLSYSAYSY-------RFKTLAETNLY-LNQSKAQTNSDSVRYTLVSEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVLSNGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGD 758          
The following BLAST results are available for this feature:
BLAST of CN188992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
XYNB_PRUPE4.752e-4960.93Putative beta-D-xylosidase (Fragment) OS=Prunus pe... [more]
BXL2_ARATH9.598e-4251.30Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
BXL1_ARATH9.598e-4255.48Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
BXL4_ARATH1.259e-2539.87Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL3_ARATH3.792e-2237.75Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL6_ARATH5.666e-1833.55Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BXL5_ARATH3.437e-1532.41Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
BXL7_ARATH3.557e-1229.33Probable beta-D-xylosidase 7 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C10_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188992 ID=CN188992; Name=CN188992; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTGCAAACCAGCAAACTTGAGAGCTGGTTTCATTAATTATTGCTTG
CAACTGAACAATTCCATTCCATTCAATTTTGCTTTTGCAAATCAAGAATG
AATTGGAACTCAATACCTATTTTATACAAAAGCCCACACAATCAACCACT
ACTATTTGTAACTTACAATTGCAACAAATATAATATATTGTCCCTTAATT
CTTCCCTTTGCTTGTGCAATGATCAAGGAAGACTAGGAACATCATTATTA
AAATTTATCCCCTCCAAATTTGCTTGAAGAGAGATTGAATGCTTGAGATC
TCCAATATGGAGACTATGTTCACCCATTGGAATTCTTCGAATTCCGAATT
TATCAACAACACTAAGGTGCTTACACACATGAATATCGATCCTAACACTT
TGTAGTGCCCCGGCTGTAACATGAACTTTCTTGAAACCAATTAGTTGCTT
ATTCGGAGACCAATTTCCAGCCGGGGGTTTCGCGAAAACCAGAAGCGTAT
GAGTCCCGGCCATTTCGCCGGTGTTTTTGACGTCAACGTGTAAACCTAAT
GACATTGCATCATTGCAATTTGTATGCGCTACCCTAATTGCATTGCTTGA
TATGGTAGTGTTTTTGAAGGCGTAGAGACTTGTTGCAATGGGTACAGAAA
ATTGATTTGGTGCCTTTGATAATGTGTGTGCAAATGTTGTGTAGCTCATT
CCGTGACCCAATGGAAA
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