CN188989

Overview
NameCN188989
Unique NameCN188989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.317e-55
Identity = 97/125 (77.60%), Postives = 110/125 (88.00%), Query Frame = 1
Query:   43 MGKGRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKK 417
            MG+GRAPCC K  + RG W+P ED+RLI +IQKHGH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNFT EEE+ IIRLH  LGN+WSKIA+ LPGRTDNEIKNVWNTHLKK+++ R+ KK
Sbjct:    1 MGRGRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKK 125          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.747e-53
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            GRAPCC+K  +K+GPW+P ED  L+  IQ+HGH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNF++EEEDTII LHE LGNRWS IA++LPGRTDNEIKNVW+THLKKRL
Sbjct:    2 GRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.236e-45
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+   +G W+  ED RLI +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT+EE++ II+LH  LGN+WS IA  LPGRTDNEIKN WNTH+K++L  R +
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+   +G W+  ED RL+ +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT+EE++ II+LH  LGN+WS IA +LPGRTDNEIKN WNTH++++L  R +
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+   RG W+  ED RL+ +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+D I++LH  LGN+WS IA++LPGRTDNEIKN WNTH++++L  R +
Sbjct:    2 GRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+   +G W+  ED RL+ +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT+EE++ II+LH  LGN+WS IA +LPGRTDNEIKN WNTH++++L  R +
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            GR+PCC+K+   +G W+  ED RL+ +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+  II+LH  LGN+WS IA +LPGRTDNEIKN WNTH+K++L
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 76/120 (63.33%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+   +G W+  ED RL  +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF+ EE++ II+LH  LGN+WS IA +LPGRTDNEIKN WNTH++++L+ R +
Sbjct:    2 GRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.044e-44
Identity = 75/120 (62.50%), Postives = 98/120 (81.67%), Query Frame = 1
Query:   52 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDV 411
            GR+PCC+K+ + +G W+  ED  L+ +I+KHG   WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNFT+EE++ II+LH  LGN+WS IA +LPGRTDNEIKN WNTH+K++L  R +
Sbjct:    2 GRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGI 121          
BLAST of CN188989 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.975e-44
Identity = 77/116 (66.38%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   52 GRAPCCDKSQ-VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 396
            GR+PCCD+ + VK+GPW P ED +L  +I ++G+ NWR+LPK AGL RCGKSCRLRW+NYLRPD++RG F+  EE TI+RLH  LGN+WSKIA  LPGRTDNEIKN WNTH++K+L
Sbjct:    2 GRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKL 117          
The following BLAST results are available for this feature:
BLAST of CN188989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB1_MAIZE1.317e-5577.60Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB4_ORYSJ2.747e-5380.00Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB30_ANTMA1.236e-4565.83Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH3.596e-4564.17Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB38_MAIZE3.596e-4564.17Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB08_ANTMA3.596e-4564.17Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH1.046e-4466.09Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB1_HORVU2.331e-4463.33Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB3_ARATH3.044e-4462.50Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB39_ARATH3.975e-4466.38Transcription factor MYB39 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188989 ID=CN188989; Name=CN188989; organism=Citrus sinensis; type=EST; length=767bp
GAGGAGTCAGTTGGGAGTCTGAAAATTTTCTTATTATCTCAAATGGGAAA
AGGGAGAGCTCCATGTTGTGATAAGAGTCAAGTGAAGAGAGGGCCATGGA
GTCCTGGTGAAGATTTAAGACTCATCACTTTTATTCAGAAACATGGTCAT
GAAAATTGGAGAGCGCTTCCTAAACAAGCTGGCCTTCTGCGATGTGGTAA
GAGTTGCCGGCTGAGATGGATTAATTACCTGAGACCAGACGTGAAACGGG
GGAACTTCACTCAAGAGGAAGAGGACACTATCATAAGGTTACATGAAAGC
TTGGGAAACAGGTGGTCCAAAATTGCATCTCAGTTGCCTGGAAGAACAGA
TAATGAGATTAAAAATGTGTGGAACACACATTTGAAGAAAAGGTTGTCTT
TCAGAGATGTTAAAAAAGATCAAGAATCTAAAGAATCTTCATCAATAAGC
TCCCCTTCCTCCTCCTCATCCAGCACCATTATATCATCAGGCAAAAGAAG
GGCAGATACTGAACTTGATGAGCACCAATGTGACCAAAACAATTACGTGC
CCAAAAAGCCTCGTGAAGGACACGGTAGCATGACAGTATCGGAAAAATTA
GTACAGCAGAGTTCAGAAACTGAAGAATCAAACCAAATCAACACGAGCAA
GGGGGTGGTGATGATGACGAAGGAATTATTAGATTCGTCTTGCTCTTCGG
ATAACTCAGTTGTGTCAAATTCTAGCCAAGTTGATGCCACAAGGCCGAAA
AGACCAAATGGGTACAT
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