CN188980

Overview
NameCN188980
Unique NameCN188980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2697 contig Csv1_Contig2697:560..1164. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188980 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.831e-48
Identity = 92/137 (67.15%), Postives = 108/137 (78.83%), Query Frame = -3
Query:  193 KQMMELGKIGLVFNPYGGKMAEIPASEIAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYSNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNSDRLEKVKTMADPENFFRNEQSIPS 603
            K+M+ELGKIGLVFNPYGGKMAE+  +   FPHR   LFKIQYS++W +   EIE+  L+QA  LYSFMT FVSK+PRS+Y NYRDVDIG+N HG +SY EG+VYG KYF  N DRL K+KT  DP NFFRNEQSIP+
Sbjct:  400 KKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSIPT 535          
BLAST of CN188980 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = -3
Query:  196 LVFNPYGGKMAEIPASEIAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYSNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNGNSDRLEKVKTMADPENFFRNEQSIP 573
            +  N +GG+M++I +    FPHR+G    ++Y ++W+    + + + L     +Y FM PFVSK+PR  Y N+ D+D+G    G  +     +     +GE YF  N +RL + KT+ DP N F + QSIP
Sbjct:  387 IALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517          
BLAST of CN188980 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.323e-19
Identity = 51/135 (37.78%), Postives = 74/135 (54.81%), Query Frame = -3
Query:  196 LVFNPYGGKMAEIPASEIAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATS----LYSFMTPFVSKSPRSAYSNYRDVDIG-INHHGEDSYAEG----KVYGEKYFNGNSDRLEKVKTMADPENFFRNEQSIP 573
            +  N +GGKM+EI      FPHR G     +Y I+W+      EE ++ + +      Y ++ PFVSK PR  Y N+ D+DIG I+   + S        + +GE+YF+ N +RL K KT+ DP N F + QSIP
Sbjct:  391 IALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQD----EESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSIP 521          
The following BLAST results are available for this feature:
BLAST of CN188980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH3.831e-4867.15Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA2.190e-1935.11Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO8.323e-1937.78Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001C03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188980 ID=CN188980; Name=CN188980; organism=Citrus sinensis; type=EST; length=605bp
ACAACAAACTAAAACCGGAACAAAAACTTATAGACTACTGAAAGGAATTG
AATTATTCGCTCGCAATAGCAGTACAAAAGCTTACTCCTATAATCCTATT
TGCTGTATATAAAGCCTATAGCAAAAAGATTACCAACACAAAAGTGCTTT
AATCAATCGTTTAAAAAGTGGCTTCTATGCCTTACTTGGTTGACTGGGGA
TGCTCTGCTCATTCCTGAAAAAATTTTCTGGATCAGCCATGGTCTTAACT
TTCTCCAACCTATCAGAATTACCATTAAAATACTTCTCCCCATACACTTT
CCCCTCAGCATAGCTATCTTCACCATGATGATTGATACCGATATCCACAT
CCCTATAATTCGAATAAGCACTTCGTGGACTCTTTGACACAAATGGAGTC
ATAAAACTGTAAAGGCTTGTCGCCTGAGAGAGTCTGTCCTCCTCAATCTC
AGTTCCAGGATCACTCCAACTTATTGAATACTGAATCTTGAACAAGTTTC
CTGCTCTGTGTGGAAATGCAATCTCTGATGCTGGAATTTCAGCCATTTTT
CCTCCATAGGGATTGAAGACCAACCCAATTTTCCCCAATTCCATCATTTG
TTTCC
back to top