CN188979

Overview
NameCN188979
Unique NameCN188979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2697 contig Csv1_Contig2697:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188979 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 6.666e-55
Identity = 102/149 (68.46%), Postives = 118/149 (79.19%), Query Frame = 1
Query:    7 SQIVDVRGRILDRKAPGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVLEMSWIQSILWWANFHNGT 453
            ++IVDV GR+LDRKA GEDLFWAI GGGG S+GVVL YK+KLVPVP  VTVFR E+ +   A D+V+KWQ V P TD NLFMRML+QPVTR K  TVRAS+VAL+LG AD +V LL+K+FPELGLKKEN  EM+W QS LWW N  N T
Sbjct:  213 AKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNAT 361          
BLAST of CN188979 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.771e-23
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   13 IVDVRGRILDRKAPGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVLEMSWIQSI 423
            ++D  G ILDR+  G+D+FWAIRGGGG  +G + A+KIKL+PVPE +TVFR  + +  E+A+ +++KWQ VA   D++ F   +L  V  N         + L+LG  D+  T++ + FPELGL  +   EMSW +S+
Sbjct:  203 LIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKLTVFRVTKNVGIEDASSLLHKWQYVADELDED-FTVSVLGGVNGN---DAWLMFLGLHLGRKDAAKTIIDEKFPELGLVDKEFQEMSWGESM 336          
BLAST of CN188979 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.771e-23
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1
Query:   13 IVDVRGRILDRKAPGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVLEMSWIQSILWWANFHNGTSPN 462
            ++D  G ILDR+A GED+FWAIRGGGG  +G + A+KIKL+PVPE VTVFR  + +A + AT +++KWQ VA   +++  + +L        +  V  +++  + G      +     FPELGL +E+ LEMSW +S  + A     +  N
Sbjct:  199 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN 345          
The following BLAST results are available for this feature:
BLAST of CN188979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH6.666e-5568.46Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_PAPSO1.771e-2342.75Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
RETO_ESCCA1.771e-2339.74Reticuline oxidase OS=Eschscholzia californica GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188979 ID=CN188979; Name=CN188979; organism=Citrus sinensis; type=EST; length=467bp
CCCNTGAGCCAGATTGTTGATGTTCGGGGGAGGATTCTCGATAGGAAAGC
ACCGGGGGAGGATCTTTTTTGGGCGATCAGAGGCGGCGGCGGAGCGAGCT
TCGGTGTTGTGCTGGCTTATAAGATCAAGTTGGTTCCCGTTCCGGAGACG
GTTACCGTGTTTAGAGCTGAAAGGCTTTTGGCTGAGAATGCAACGGATGT
GGTCTATAAATGGCAGTTGGTGGCGCCGGCCACGGATGATAATTTGTTTA
TGAGAATGCTTTTGCAGCCTGTTACAAGAAACAAGAAGCCGACGGTCAGG
GCATCGATTGTGGCGTTGTATTTAGGTGGTGCCGACAGTCTCGTGACTCT
CCTGGCCAAGGATTTTCCAGAACTGGGGCTGAAGAAAGAAAATGTCTTGG
AAATGAGTTGGATTCAATCAATTCTTTGGTGGGCCAATTTCCATAATGGA
ACTTCACCAAATGTTTT
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