CN188962

Overview
NameCN188962
Unique NameCN188962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.424e-50
Identity = 91/97 (93.81%), Postives = 97/97 (100.00%), Query Frame = 1
Query:  109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399
            MATASVAFKSREDHRKQ+ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN+E+PSLKHQRKWKSDPNYTKSWYDRGAKI+QA+KYRKGAC+
Sbjct:    1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQ 97          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 1
Query:  109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399
            MATASV+FKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNA++PSLKHQR WKSDPNYTKSWYDRGAK++QA+KYRKGACE
Sbjct:    1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACE 97          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 1
Query:  109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399
            MATASV+FKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNA++PSLKHQR WKSDPNYTKSWYDRGAK++QA+KYRKGACE
Sbjct:    1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACE 97          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1
Query:  109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGAC 396
            MATASVAFKSREDHRK+LELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +E+PSLKHQ+ WK +P   K WYDRG KIYQA++YRKGAC
Sbjct:    1 MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGAC 96          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQ-ADKYRKGACE 399
            MA++    K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+  APWYLNA +PSLKHQR   +     K WY RGA   + A K+RKGACE
Sbjct:    1 MASSISHRKTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-GVTKKEMDKGWYLRGATTGEAATKFRKGACE 97          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_CHICK (Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1
Query:  136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQR-KWKSDPNYTKS--WYDRGAKIYQ-ADKYRKGACE 399
            +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR + +    Y+ S  WY RG K +  A +YRKGACE
Sbjct:   27 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGDWYKRGVKEHSIATRYRKGACE 119          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_CRYNE (Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neoformans GN=SLU7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNY-TKSWYDRGAKI-YQADKYRKGACE 399
            SRE++R+Q +LE ARKAG APA +DE G  INPHIP+Y++ APWY +  RPSL HQR  +  P+     WYDRGAK    A KYRKGACE
Sbjct:   14 SREEYRRQKDLEAARKAGTAPAALDEQGNAINPHIPEYITKAPWYADTGRPSLAHQRINEQGPHLKLDEWYDRGAKAGPAAKKYRKGACE 103          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_BOVIN (Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQR-KWKSDPNYTKS--WYDRGAKIYQ-ADKYRKGACE 399
            +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR + +    Y+ S  WY RG K      KYRKGACE
Sbjct:   29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGACE 121          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_RAT (Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQRKWKSDPNYTKS---WYDRGAKIYQ-ADKYRKGACE 399
            +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR          S   WY RG K      KYRKGACE
Sbjct:   29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACE 121          
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_MOUSE (Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQRKWKSDPNYTKS---WYDRGAKIYQ-ADKYRKGACE 399
            +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR          S   WY RG K      KYRKGACE
Sbjct:   29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACE 121          
The following BLAST results are available for this feature:
BLAST of CN188962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SLU7A_ARATH1.424e-5093.81Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis tha... [more]
SLU7_ORYSJ7.068e-5092.78Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7_ORYSI7.068e-5092.78Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7B_ARATH1.427e-4282.29Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis tha... [more]
SLU7_DICDI6.025e-2558.16Pre-mRNA-splicing factor slu7 OS=Dictyostelium dis... [more]
SLU7_CHICK4.318e-2360.22Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=... [more]
SLU7_CRYNE1.256e-2258.89Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neof... [more]
SLU7_BOVIN1.641e-2260.22Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU... [more]
SLU7_RAT3.655e-2259.14Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus... [more]
SLU7_MOUSE3.655e-2259.14Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188962 ID=CN188962; Name=CN188962; organism=Citrus sinensis; type=EST; length=701bp
AGGTACAATCTTCTATTTTAATTGCCTTCGTCGTCGCCCCTCGCCGACTA
TTGAAACTGTCACTGATCTCTCCATTAACCATCTTCATCGTTTATATCGC
ATTCCAACATGGCTACTGCGTCAGTGGCGTTCAAATCAAGGGAGGATCAC
AGGAAGCAGTTGGAATTGGAGGAAGCACGAAAGGCCGGGCTTGCTCCAGC
TGAGGTTGATGAGGATGGGAAGGAAATTAACCCTCACATTCCTCAGTATA
TGTCTTCTGCCCCTTGGTATCTTAATGCAGAGAGACCTAGCTTAAAACAT
CAAAGGAAATGGAAATCTGACCCAAACTACACAAAATCCTGGTATGATCG
AGGTGCGAAAATATATCAGGCTGATAAGTATAGAAAGGGTGCATGTGAGA
AGTAAGTGGATGTTGGATTACTCCATATTGTTTCACTTCCTACCGTTCTT
CCAGATTATAATTCTTAAATTTGGGATGCTTGTTGGAGTAAGTTATGGGC
TATCCAATTCAGAAAAATAAAAAAGTTATTAGACATAAAAACCATGCTTA
TTGTTATTATTATTTTCGTAATCTAAAAAATTCATATGATGATTATTGTA
GTGGTGGTGTTATTTTGAGGATTTTACAGATGCCTGTGTATAACTGAGAT
GAGGGAAAATAAAGTTCATTGCACGGAAAAGATTATGGAATTACCTTTGT
T
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