CN188961

Overview
NameCN188961
Unique NameCN188961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:316..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.768e-39
Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = -2
Query:  282 IAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYL-ACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 641
            +A  LVW+EVEA QFDP +SKL WELV+K +FGM TD   VEENEAKLAK+LDVYEARL++S+YL A DSFTLVDLHHLP +  L+GT VKKLF+ R HVSAW   I +RP+W K LAL K
Sbjct:   95 MAAQLVWEEVEAHQFDPVASKLAWELVFKGIFGMQTDTTVVEENEAKLAKVLDVYEARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKKLFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 81/126 (64.29%), Postives = 93/126 (73.81%), Query Frame = -2
Query:  294 GTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 671
            G  L   GK +A + +  E+E+ +FDP  SKL WE V KP++GMTTD   VEE EAKLAK+LDVYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:   83 GNNLLSTGKDMAIIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.720e-39
Identity = 76/118 (64.41%), Postives = 91/118 (77.12%), Query Frame = -2
Query:  294 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 647
            K +A + VW EVE+ +FDP +SKL +E+V KPM GM TD AAV ENE KL K+LDVYE+RL  SKYL  DSFTL DLHH P +N L+GT VK LFD+RPHVSAW ADI +RPAW+K +
Sbjct:   91 KKMAIMSVWMEVESQKFDPVASKLTFEIVIKPMLGMVTDDAAVAENEEKLGKVLDVYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKSLFDSRPHVSAWCADILARPAWSKAI 208          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.146e-38
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = -2
Query:  294 GTQLTCPG-KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 671
            G QL   G K IA + +  E+E+ +FDP  SKL WE V KP++GMTTD   VEE EAKLAK+LDVYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:   83 GNQLVSLGSKDIAGIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 72/122 (59.02%), Postives = 96/122 (78.69%), Query Frame = -2
Query:  282 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 647
            K +  + VW EVE  +F+PP++KL WEL  KP+ GMTTD AAV+E+EA+L+K+LD+YE +L++SKYL  DSFTLVDLHH+PNI  L+ + VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:   91 KKMPSMSVWMEVEGQKFEPPATKLTWELGIKPIIGMTTDDAAVKESEAQLSKVLDIYETQLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.073e-36
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = -2
Query:  282 GTQLTCPGKPIAPLL-VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 671
            G QL        P++ VW EVE  +F+P +SKL WEL  KP+ GMTTD  AV+E+E +L+K+LD+YE RL++SKYL  DSFTLVDLHH+PNI  L+ T VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:   82 GYQLILQDPKKMPIMSVWMEVEGQKFEPHASKLTWELGIKPIIGMTTDDDAVKESEVQLSKVLDIYETRLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.401e-36
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = -2
Query:  282 VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 626
            VW +VE  QFDP +SKL +E V+K MFGMTTDPAAV+E E KL K+LDVYEARL++S++LA DSFTL DLHHLP I+ LLGT  K LFD+RP VS W   I++RPAWAKV+ L K
Sbjct:  148 VWLQVEGQQFDPNASKLAFERVFKGMFGMTTDPAAVQELEGKLQKVLDVYEARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKVLFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.094e-32
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = -2
Query:  294 EVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 617
            +VEA QFDP +SKL WE V+K  +G+ TD A V E EAKLAK+LDVYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KVL
Sbjct:  105 QVEAHQFDPVASKLAWEQVFKFNYGLNTDQAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = -2
Query:  297 APLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 638
            A + +  +VE  QFDP +SKL +E ++K ++G+TTD A V E EAKLAK+LDVYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KV
Sbjct:   98 AIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKV 211          
BLAST of CN188961 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  282 VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 626
            VW EVEA Q+    + + ++++  PM G TTD   V+EN  KL K+L+VYEARL++ KYLA D  +L DL+H+     L  TP   + DA PHV AW + +  RP+  KV AL+K
Sbjct:   97 VWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERPSVQKVAALMK 211          
The following BLAST results are available for this feature:
BLAST of CN188961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GSTF_SILCU1.768e-3967.77Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GSTF1_ARATH5.145e-3964.29Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF_HYOMU6.720e-3964.41Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GST11_ARATH1.146e-3865.35Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_TOBAC9.704e-3859.02Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GSTF2_TOBAC1.073e-3657.25Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF6_ARATH1.401e-3666.09Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GST16_ARATH2.094e-3263.89Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF4_ARATH1.357e-3158.77Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
GSTF1_MAIZE4.838e-2145.22Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188961 ID=CN188961; Name=CN188961; organism=Citrus sinensis; type=EST; length=672bp
TTTTTTTTTTTTCGCAGAATATCTCCAGCTTCGTTTTATTAGGGTACATA
GATAAAATAAAAACCTCAAGCCATCAACATCAAAGTTGAATATGAGGCAG
TGCTGTTGAAATACAAAAGCGGTAGTACAAACTACAAAGCATCAATATTC
TGCAGAATATTGATGACAAACGCCAAACAAGAGAATACGAACTCGAAAAC
CAGCCTAATAGGTATTACAAAAGATAAGTGACCACCGAGGAGCGACTAAC
GTCTAGTAGGTAGCGGGCAGAGTGTTCAGTGTTTGAGCAAGGCAAGGACC
TTAGCCCAAGCCGGTCTGGAAGTGATATCAGCTGCCCATGCGCTAACATG
GGGGCGTGCATCAAACAGCTTCTTGACAGGCGTCCCCAACAACAAATTAA
TATTGGGGAGATGATGCAAATCGACCAAGGTGAAGCTGTCGCACGCCAAG
TATTTGGACTGAGACAAACGGGCCTCGTAAACATCTAAAATTTTGGCAAG
CTTAGCTTCATTTTCTTCAACCGCAGCTGGATCAGTGGTCATTCCAAACA
TTGGCTTGTACACGAGCTCCCAGTTGAGCTTCGATGATGGGGGGTCGAAC
TGGAGTGCCTCCACCTCCTTCCATACCAATAACGGGGCGATGGGCTTGCC
TGGGCATGTTAACTGGGTGCCT
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