CN188959

Overview
NameCN188959
Unique NameCN188959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:375..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 95/142 (66.90%), Postives = 105/142 (73.94%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR             LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  115 GEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR-------------LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDSFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR              MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  117 GEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR--------------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 80/145 (55.17%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ E+   YG    Q Q    +FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  117 GEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR-------------LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 79/144 (54.86%), Postives = 96/144 (66.67%), Query Frame = -1
Query:  268 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 690
            GE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R               E  Q N  Q+ +PS     GYG +PAQ  G++F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  113 GEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR-------------FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.164e-31
Identity = 80/147 (54.42%), Postives = 97/147 (65.99%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDS---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ ED    YG    Q Q +S   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  117 GEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLR-------------LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.632e-23
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = -1
Query:  454 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVN 690
            GE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQR             LMEG Q+N
Sbjct:  115 GEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQR-------------LMEGSQLN 180          

HSP 2 Score: 31.187 bits (69), Expect = 3.632e-23
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = -2
Query:  342 VQKIVVMGLNQLNLRAIASFTPWNVNPHCKL 434
            + K+  M   QL LRA+ASF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = -1
Query:  268 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 690
            GE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH    G     G++          ++  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  114 GEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGG-----GWE------GGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  268 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 690
            GE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +    + +R     G    EG + N            Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  114 GEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVT----------YAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  116 GEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CN188959 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = -1
Query:  265 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 690
            GE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  116 GEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
The following BLAST results are available for this feature:
BLAST of CN188959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AGL9_PETHY8.159e-4366.90Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA2.625e-4162.76MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH1.444e-3155.17Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE1.444e-3154.86Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL7.164e-3154.42Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC3.632e-2368.35Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH7.940e-2242.95Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH3.940e-2143.62Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS7_ORYSJ6.721e-2143.45MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI6.721e-2143.45MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188959 ID=CN188959; Name=CN188959; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTTTTTATTCCCAACAAGGCTTTGTTAAATAAAGATAAG
CGCGGTGATTGAAAATACACGCACACACAACATAGCTATATATCGTCATC
AGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTA
TGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAA
AGTTGCTGATTCTTATGGATCAACTACAATACATTGACTGGTAATGCCCG
CCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGG
GCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCA
ATGTGGGTTCACATTCCAAGGCGTGAAAGAAGCTATCGCCCTGAGGTTGA
GCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAG
TGTGTTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAAGCGGCGT
GCCTTAACGTCATCGTCCTTTGTTTGAGGGTCTTATTTGCTTCGCTCAAC
AACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGT
TCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTG
ACTCAAGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCC
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